Gene family  

Sub-families
ORTHO002272 (33 genes in 24 species)
ORTHO045815 (2 genes in 2 species)
ORTHO052793 (2 genes in 1 species)
View all sub-families (3)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (2 genes)
ath
Arabidopsis thaliana (2 genes)
bdi
Brachypodium distachyon (2 genes)
cpa
Carica papaya (1 gene)
fve
Fragaria vesca (1 gene)
gma
Glycine max (5 genes)
lja
Lotus japonicus (1 gene)
mdo
Malus domestica (4 genes)
mes
Manihot esculenta (2 genes)
mrcc299
Micromonas sp. RCC299 (1 gene)
mtr
Medicago truncatula (1 gene)
olu
Ostreococcus lucimarinus (2 genes)
osa
Oryza sativa ssp. japonica (1 gene)
osaindica
Oryza sativa ssp. indica (2 genes)
ota
Ostreococcus tauri (1 gene)
ppa
Physcomitrella patens (2 genes)
ptr
Populus trichocarpa (5 genes)
rco
Ricinus communis (1 gene)
sbi
Sorghum bicolor (2 genes)
tca
Theobroma cacao (1 gene)
vca
Volvox carteri (1 gene)
vvi
Vitis vinifera (1 gene)
zma
Zea mays (2 genes)



The gene family HOM003016 has 43 genes in 23 species (3 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 3, showing 20 records out of 43 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL6G34960 aly name=fgenesh2_kg.6__3137__AT4G11860.1;pid=490003;prot=eq;tid=490003 - scaffold_6 No
AL7G19240 aly name=fgenesh1_pg.C_scaffold_7001641;pid=354468;prot=eq;tid=354468 - scaffold_7 No
AT4G11860 ath FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cytosol, nucleus, plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF544 (InterPro:IPR007518), Ubiquitin interacting motif (InterPro:IPR003903); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF544) (TAIR:AT4G22960.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).;Protein of unknown function (DUF544) transcript=eq;prot=eq; - 4 No
AT4G22960 ath Protein of unknown function (DUF544) ; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF544 (InterPro:IPR007518); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF544) (TAIR:AT4G11860.1); Has 737 Blast hits to 425 proteins in 174 species: Archae - 0; Bacteria - 23; Metazoa - 282; Fungi - 261; Plants - 75; Viruses - 0; Other Eukaryotes - 96 (source: NCBI BLink).;Protein of unknown function (DUF544) transcript=eq;prot=eq; + 4 No
BD1G34980 bdi pid=Bradi1g34980.1;tid=Bradi1g34980.1;GeneName=Bradi1g34980;transcript=eq;prot=eq - Bd1 No
BD1G44400 bdi pid=Bradi1g44400.1;tid=Bradi1g44400.1;GeneName=Bradi1g44400;transcript=eq;prot=eq + Bd1 Yes
CP00029G00300 cpa name=evm.TU.supercontig_29.30;pid=evm.TU.supercontig_29.30;prot=eq;transcript=eq - supercontig_29 No
FV5G01470 fve Protein FAM63A (probable) transcript=eq;prot=eq;pid=gene32355 + LG5 No
GM01G42400 gma 01 pid=16246052;transcript=eq;prot=eq;name=Glyma01g42400.1 + Gm01 No
GM03G42580 gma 03 pid=16254284;transcript=eq;prot=eq;name=Glyma03g42580.1 + Gm03 No
GM04G43690 gma 04 pid=16257803;transcript=eq;prot=eq;name=Glyma04g43690.1 + Gm04 No
GM11G00200 gma 11 pid=16282141;transcript=eq;prot=eq;name=Glyma11g00200.1 - Gm11 No
GM11G02970 gma 11 pid=16282487;transcript=eq;prot=eq;name=Glyma11g02970.1 - Gm11 No
LJ2G027400 lja prot=eq;transcript=eq;scaffold=CM0304;name=chr2.CM0304.430.nc + chr2 No
MD07G008520 mdo transcript=eq;prot=eq;pid=MDP0000184002;tid=MDP0000184002;contig=MDC007669.272 + 7 No
MD07G008530 mdo transcript=eq;prot=eq;pid=MDP0000284227;tid=MDP0000284227;contig=MDC007669.429 + 7 No
MD10G003150 mdo transcript=eq;prot=eq;pid=MDP0000516696;tid=MDP0000516696;contig=MDC007669.422 - 10 No
MD10G003160 mdo transcript=eq;prot=eq;pid=MDP0000179835;tid=MDP0000179835;contig=MDC007669.428 - 10 No
ME07035G00510 mes PACid=17977181;RNAname=cassava4.1_003900m;GeneName=cassava4.1_003900m.g;transcript=eq;prot=eq - scaffold07035 No
ME07088G00090 mes PACid=17966716;RNAname=cassava4.1_002580m;GeneName=cassava4.1_002580m.g;transcript=eq;prot=eq - scaffold07088 No
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