Gene family  

Sub-families
ORTHO005758 (25 genes in 20 species)
ORTHO021754 (5 genes in 5 species)
ORTHO039402 (3 genes in 1 species)
View all sub-families (6)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (1 gene)
ath
Arabidopsis thaliana (1 gene)
bdi
Brachypodium distachyon (2 genes)
cpa
Carica papaya (1 gene)
fve
Fragaria vesca (1 gene)
gma
Glycine max (2 genes)
lja
Lotus japonicus (4 genes)
mdo
Malus domestica (2 genes)
mes
Manihot esculenta (1 gene)
mrcc299
Micromonas sp. RCC299 (1 gene)
mtr
Medicago truncatula (3 genes)
osa
Oryza sativa ssp. japonica (3 genes)
osaindica
Oryza sativa ssp. indica (6 genes)
ppa
Physcomitrella patens (3 genes)
ptr
Populus trichocarpa (3 genes)
rco
Ricinus communis (1 gene)
sbi
Sorghum bicolor (1 gene)
smo
Selaginella moellendorffii (1 gene)
tca
Theobroma cacao (1 gene)
vvi
Vitis vinifera (1 gene)
zma
Zea mays (4 genes)



The gene family HOM003007 has 43 genes in 21 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 3, showing 20 records out of 43 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL4G15530 aly name=fgenesh2_kg.4__1065__AT2G30880.1;pid=482005;prot=eq;tid=482005 - scaffold_4 No
AT2G30880 ath Pleckstrin homology (PH) domain-containing protein; FUNCTIONS IN: phosphoinositide binding; INVOLVED IN: signal transduction; LOCATED IN: plant-type cell wall; EXPRESSED IN: stem; CONTAINS InterPro DOMAIN/s: Pleckstrin homology-type (InterPro:IPR011993), Pleckstrin homology (InterPro:IPR001849); Has 8327 Blast hits to 6951 proteins in 819 species: Archae - 67; Bacteria - 1101; Metazoa - 4180; Fungi - 797; Plants - 557; Viruses - 16; Other Eukaryotes - 1609 (source: NCBI BLink).;Pleckstrin homology (PH) domain-containing protein transcript=eq;prot=eq; - 2 No
BD1G12910 bdi ATPase activity (Blast2GO) pid=Bradi1g12910.1;tid=Bradi1g12910.1;GeneName=Bradi1g12910;transcript=eq;prot=eq + Bd1 No
BD1G58050 bdi motor activity (Blast2GO) pid=Bradi1g58050.1;tid=Bradi1g58050.1;GeneName=Bradi1g58050;transcript=eq;prot=eq + Bd1 No
CP00050G01160 cpa name=evm.TU.supercontig_50.116;pid=evm.TU.supercontig_50.116;prot=eq;transcript=eq + supercontig_50 No
FV6G35340 fve Myotubularin-related protein 13 (probable) transcript=eq;prot=eq;pid=gene28760 + LG6 No
GM02G45380 gma 02 pid=16250265;transcript=eq;prot=eq;name=Glyma02g45380.1 - Gm02 No
GM14G03430 gma 14 pid=16294216;transcript=eq;prot=eq;name=Glyma14g03430.1 + Gm14 No
LJ0G152370 lja partial;prot=eq;transcript=eq;scaffold=LjSGA_047841;name=LjSGA_047841.1 + LjSGA_047841 No
LJ0G187510 lja prot=eq;transcript=eq;scaffold=LjSGA_059578;name=LjSGA_059578.1 - LjSGA_059578 No
LJ2G036860 lja prot=eq;transcript=eq;scaffold=LjT04L10;name=chr2.LjT04L10.110.nc - chr2 No
LJ6G006810 lja prot=eq;transcript=eq;scaffold=CM0057;name=chr6.CM0057.170.nc - chr6 No
MD09G011360 mdo transcript=eq;prot=eq;pid=MDP0000175345;tid=MDP0000175345;contig=MDC005930.417 - 9 No
MD17G011960 mdo transcript=eq;prot=eq;pid=MDP0000900345;tid=MDP0000900345;contig=MDC005337.102 - 17 No
ME07520G01230 mes PACid=17979481;RNAname=cassava4.1_006133m;GeneName=cassava4.1_006133m.g;transcript=eq;prot=eq + scaffold07520 No
MRCC299_03G05070 mrcc299 name=est_orfs.Chr_03_2151_3200113:1;pid=52280;prot=eq;tid=52280;transcript=eq - Chr_03 No
MT0G19390 mtr Unknown Protein (AHRD V1) transcript=eq;prot=eq;pid=AC233140_59.1; + AC233140.9 No
MT0G26040 mtr Unknown Protein (AHRD V1) transcript=eq;prot=eq;pid=AC233668_29.1; - AC233668.2 No
MT5G091000 mtr Unknown Protein (AHRD V1); contains Interpro domain(s) IPR011993 Pleckstrin homology-type transcript=eq;prot=eq;pid=Medtr5g091000.1; - 5 No
OS03G46340 osa pleckstrin homology domain%2Dcontaining protein, putative, expressed transcript=eq;prot=eq; - 3 No
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