Gene family  

Sub-families
ORTHO006548 (24 genes in 19 species)
ORTHO012147 (16 genes in 12 species)
View all sub-families (2)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (1 gene)
ath
Arabidopsis thaliana (4 genes)
cpa
Carica papaya (1 gene)
cre
Chlamydomonas reinhardtii (1 gene)
gma
Glycine max (3 genes)
lja
Lotus japonicus (3 genes)
mdo
Malus domestica (1 gene)
mrcc299
Micromonas sp. RCC299 (1 gene)
mtr
Medicago truncatula (3 genes)
osa
Oryza sativa ssp. japonica (3 genes)
osaindica
Oryza sativa ssp. indica (2 genes)
ota
Ostreococcus tauri (1 gene)
ppa
Physcomitrella patens (2 genes)
ptr
Populus trichocarpa (1 gene)
rco
Ricinus communis (1 gene)
sbi
Sorghum bicolor (2 genes)
smo
Selaginella moellendorffii (1 gene)
tca
Theobroma cacao (2 genes)
vca
Volvox carteri (1 gene)
vvi
Vitis vinifera (3 genes)
zma
Zea mays (7 genes)



The gene family HOM002955 has 44 genes in 21 species (1 outlier gene).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 3, showing 20 records out of 44 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL5G09840 aly name=fgenesh2_kg.5__730__AT2G07687.1;pid=484738;prot=eq;tid=484738 - scaffold_5 No
AT2G07687 ath Cytochrome c oxidase, subunit III; FUNCTIONS IN: cytochrome-c oxidase activity; INVOLVED IN: mitochondrial electron transport, cytochrome c to oxygen; LOCATED IN: membrane; CONTAINS InterPro DOMAIN/s: Cytochrome c oxidase, subunit III (InterPro:IPR000298); BEST Arabidopsis thaliana protein match is: cytochrome c oxidase subunit 3 (TAIR:ATMG00730.1); Has 29038 Blast hits to 29025 proteins in 5946 species: Archae - 74; Bacteria - 4466; Metazoa - 19232; Fungi - 401; Plants - 673; Viruses - 0; Other Eukaryotes - 4192 (source: NCBI BLink).;Cytochrome c oxidase, subunit III transcript=eq;prot=eq; - 2 No
AT2G07707 ath Plant mitochondrial ATPase, F0 complex, subunit 8 protein; FUNCTIONS IN: cobalt ion binding; INVOLVED IN: ATP synthesis coupled proton transport; LOCATED IN: mitochondrion, vacuole, membrane; EXPRESSED IN: cultured cell, leaf; CONTAINS InterPro DOMAIN/s: ATPase, F0 complex, subunit 8, mitochondrial, plant (InterPro:IPR003319), Protein of unknown function DUF1082, plant mitochondria (InterPro:IPR009455); BEST Arabidopsis thaliana protein match is: Plant mitochondrial ATPase, F0 complex, subunit 8 protein (TAIR:ATMG00480.1); Has 226 Blast hits to 226 proteins in 79 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 218; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).;Plant mitochondrial ATPase, F0 complex, subunit 8 protein transcript=eq;prot=eq; + 2 No
ATMG00480 ath Encodes subunit 8 of the mitochondrial F(O) ATP synthase complex.;Plant mitochondrial ATPase, F0 complex, subunit 8 protein transcript=eq;prot=eq; + mitochondrial No
ATMG00730 ath Encodes cytochrome c oxidase subunit 3.;cytochrome c oxidase subunit 3 transcript=eq;prot=eq; + mitochondrial No
CP32646G00010 cpa name=evm.TU.contig_32646.1;pid=evm.TU.contig_32646.1;prot=eq;transcript=eq - contig_32646 No
CR04G02000 cre name=estExt_GenewiseH_1.C_150140;pid=56014;prot=eq;tid=56014;transcript=eq + chromosome_4 No
GM00G00745 gma 405 pid=16254290;transcript=eq;prot=eq;name=Glyma0405s00220.2 - scaffold_405 No
GM00G01025 gma 2269 pid=16318415;transcript=eq;prot=eq;name=Glyma2269s00200.1 + scaffold_2269 No
GM12G24990 gma 12 pid=16288090;transcript=eq;prot=eq;name=Glyma12g24990.1 - Gm12 No
LJ0G000620 lja prot=eq;transcript=eq;scaffold=LjSGA_000271;name=LjSGA_000271.2 + LjSGA_000271 No
LJ0G002340 lja prot=eq;transcript=eq;scaffold=LjSGA_003279;name=LjSGA_003279.1 + LjSGA_003279 No
LJ0G002350 lja partial;prot=eq;transcript=eq;scaffold=LjSGA_003280;name=LjSGA_003280.1 + LjSGA_003280 No
MD09G011280 mdo transcript=eq;prot=eq;pid=MDP0000809400;tid=MDP0000809400;contig=MDC015172.255 + 9 No
MRCC299_MG00210 mrcc299 cox3;cytochrome oxidase subunit 3;protein_id=ACO55590.1; + mitochondrial No
MT1G005150 mtr Cytochrome c oxidase subunit 3 (AHRD V1 **** Q8M617_SOLTU); contains Interpro domain(s) IPR000298 Cytochrome c oxidase, subunit III transcript=eq;prot=eq;pid=Medtr1g005150.1; - 1 No
MT6G032900 mtr Cytochrome c oxidase subunit 3 (AHRD V1 ***- Q8M617_SOLTU); contains Interpro domain(s) IPR000298 Cytochrome c oxidase, subunit III transcript=eq;prot=eq;pid=Medtr6g032900.1; + 6 No
MT7G101570 mtr ATPase subunit 8 (Fragment) (AHRD V1 ***- Q5MFC9_ESCCA) transcript=eq;prot=eq;pid=Medtr7g101570.1; + 7 No
OS12G34018 osa ATP synthase protein YMF19, putative, expressed transcript=eq;prot=eq; - 12 No
OSINDICA_MG00020 osaindica cox3;cytochrome c oxidase subunit 3;protein_id=AAZ99284.1; - mitochondrial No
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