Gene family  

Sub-families
ORTHO004918 (26 genes in 19 species)
ORTHO011997 (16 genes in 15 species)
View all sub-families (2)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (2 genes)
ath
Arabidopsis thaliana (2 genes)
bdi
Brachypodium distachyon (2 genes)
cpa
Carica papaya (1 gene)
fve
Fragaria vesca (2 genes)
gma
Glycine max (4 genes)
lja
Lotus japonicus (2 genes)
mdo
Malus domestica (4 genes)
mes
Manihot esculenta (3 genes)
mtr
Medicago truncatula (2 genes)
osa
Oryza sativa ssp. japonica (2 genes)
osaindica
Oryza sativa ssp. indica (2 genes)
ppa
Physcomitrella patens (1 gene)
ptr
Populus trichocarpa (2 genes)
rco
Ricinus communis (2 genes)
sbi
Sorghum bicolor (2 genes)
smo
Selaginella moellendorffii (4 genes)
tca
Theobroma cacao (2 genes)
vvi
Vitis vinifera (2 genes)
zma
Zea mays (1 gene)



The gene family HOM002931 has 44 genes in 20 species (1 outlier gene).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 3, showing 20 records out of 44 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL2G11330 aly name=scaffold_201167.1;pid=894093;prot=eq;tid=925606 - scaffold_2 No
AL5G27130 aly name=fgenesh2_kg.5__2115__AT3G56830.3;pid=486123;prot=eq;tid=486123 - scaffold_5 No
AT1G65420 ath Chloroplast localized YCF20-like gene involved in nonphotochemical quenching. Has overlapping functions with npq6.;Protein of unknown function (DUF565) transcript=eq;prot=eq; - 1 No
AT3G56830 ath Similar in sequence to NPQ6 and NPQ7, but loss of function mutant does not exhibit a nonphotochemical quenching phenotype.;Protein of unknown function (DUF565) transcript=eq;prot=eq; - 3 No
BD1G01330 bdi pid=Bradi1g01330.1;tid=Bradi1g01330.1;GeneName=Bradi1g01330;transcript=eq;prot=eq + Bd1 No
BD4G27376 bdi pid=Bradi4g27376.1;tid=Bradi4g27376.1;GeneName=Bradi4g27376;transcript=eq;prot=eq - Bd4 No
CP00099G00440 cpa name=evm.TU.supercontig_99.44;pid=evm.TU.supercontig_99.44;prot=eq;transcript=eq - supercontig_99 No
FV6G00180 fve Ycf20-like protein (similar to) transcript=eq;prot=eq;pid=gene21529 - LG6 No
FV7G11570 fve Ycf20-like protein (probable) transcript=eq;prot=eq;pid=gene03917 - LG7 No
GM01G33620 gma 01 pid=16245067;transcript=eq;prot=eq;name=Glyma01g33620.1 + Gm01 No
GM03G03290 gma 03 pid=16250976;transcript=eq;prot=eq;name=Glyma03g03290.1 - Gm03 No
GM07G30060 gma 07 pid=16268229;transcript=eq;prot=eq;name=Glyma07g30060.1 - Gm07 No
GM08G07240 gma 08 pid=16270276;transcript=eq;prot=eq;name=Glyma08g07240.1 + Gm08 No
LJ0G123880 lja partial;prot=eq;transcript=eq;scaffold=LjSGA_038952;name=LjSGA_038952.1 - LjSGA_038952 No
LJ4G005440 lja prot=eq;transcript=eq;scaffold=CM0100;name=chr4.CM0100.50.nc - chr4 No
MD00G234030 mdo transcript=eq;prot=eq;pid=MDP0000258071;tid=MDP0000258071;contig=MDC010168.198 + MDC010168.198 No
MD04G020090 mdo transcript=eq;prot=eq;pid=MDP0000141129;tid=MDP0000141129;contig=MDC017872.78 - 4 No
MD05G018060 mdo transcript=eq;prot=eq;pid=MDP0000766106;tid=MDP0000766106;contig=MDC006091.289 - 5 No
MD12G025390 mdo transcript=eq;prot=eq;pid=MDP0000135047;tid=MDP0000135047;contig=MDC000262.256 - 12 No
ME00097G00140 mes PACid=17974862;RNAname=cassava4.1_016625m;GeneName=cassava4.1_016625m.g;transcript=eq;prot=eq + scaffold00097 No
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outlier