Gene family  

Sub-families
ORTHO029971 (4 genes in 4 species)
ORTHO034529 (3 genes in 2 species)
ORTHO034602 (3 genes in 2 species)
View all sub-families (6)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (3 genes)
ath
Arabidopsis thaliana (3 genes)
cpa
Carica papaya (3 genes)
fve
Fragaria vesca (1 gene)
gma
Glycine max (6 genes)
lja
Lotus japonicus (2 genes)
mdo
Malus domestica (6 genes)
mes
Manihot esculenta (4 genes)
mtr
Medicago truncatula (2 genes)
osa
Oryza sativa ssp. japonica (1 gene)
osaindica
Oryza sativa ssp. indica (1 gene)
ptr
Populus trichocarpa (4 genes)
rco
Ricinus communis (3 genes)
sbi
Sorghum bicolor (1 gene)
tca
Theobroma cacao (2 genes)
vvi
Vitis vinifera (1 gene)
zma
Zea mays (1 gene)



The gene family HOM002912 has 44 genes in 17 species (1 outlier gene).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 3, showing 20 records out of 44 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL1G06920 aly name=fgenesh2_kg.1__707__AT1G07330.1;pid=470753;prot=eq;tid=470753 + scaffold_1 No
AL1G38410 aly name=fgenesh2_kg.1__3699__AT5G17910.1;pid=473745;prot=eq;tid=473745 - scaffold_1 No
AL4G14140 aly name=fgenesh1_pg.C_scaffold_4001068;pid=344726;prot=eq;tid=344726 - scaffold_4 No
AT1G07330 ath unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G29620.1); Has 597 Blast hits to 536 proteins in 121 species: Archae - 2; Bacteria - 47; Metazoa - 170; Fungi - 43; Plants - 98; Viruses - 0; Other Eukaryotes - 237 (source: NCBI BLink). transcript=eq;prot=eq; + 1 No
AT2G29620 ath unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G07330.1); Has 887 Blast hits to 750 proteins in 151 species: Archae - 2; Bacteria - 63; Metazoa - 270; Fungi - 51; Plants - 111; Viruses - 6; Other Eukaryotes - 384 (source: NCBI BLink). transcript=eq;prot=eq; - 2 No
AT5G17910 ath unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G29620.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). transcript=eq;prot=eq; + 5 No
CP00073G00380 cpa name=evm.TU.supercontig_73.38;pid=evm.TU.supercontig_73.38;prot=eq;transcript=eq + supercontig_73 No
CP00112G00530 cpa name=evm.TU.supercontig_112.54;pid=evm.TU.supercontig_112.54;prot=eq;transcript=eq + supercontig_112 No
CP00117G00560 cpa name=evm.TU.supercontig_117.56;pid=evm.TU.supercontig_117.56;prot=eq;transcript=eq + supercontig_117 No
FV3G30650 fve hypothetical protein transcript=eq;prot=eq;pid=gene27927 - LG3 No
GM00G00110 gma 28 pid=16242687;transcript=eq;prot=eq;name=Glyma0028s00220.1 + scaffold_28 No
GM02G39030 gma 02 pid=16249529;transcript=eq;prot=eq;name=Glyma02g39030.1 - Gm02 No
GM03G00710 gma 03 pid=16250687;transcript=eq;prot=eq;name=Glyma03g00710.1 + Gm03 No
GM14G37080 gma 14 pid=16296680;transcript=eq;prot=eq;name=Glyma14g37080.1 - Gm14 No
GM18G07270 gma 18 pid=16308182;transcript=eq;prot=eq;name=Glyma18g07270.1 - Gm18 No
GM19G30070 gma 19 pid=16313248;transcript=eq;prot=eq;name=Glyma19g30070.1 - Gm19 No
LJ1G042600 lja partial;prot=eq;transcript=eq;scaffold=CM1409;name=chr1.CM1409.200.nd + chr1 No
LJ6G004150 lja partial;prot=eq;transcript=eq;scaffold=LjT18B08;name=chr6.LjT18B08.50.nd - chr6 No
MD00G253870 mdo transcript=eq;prot=eq;pid=MDP0000125884;tid=MDP0000125884;contig=MDC010909.286 - MDC010909.286 No
MD00G455080 mdo transcript=eq;prot=eq;pid=MDP0000690207;tid=MDP0000690207;contig=MDC021005.134 + MDC021005.134 No
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