Gene family  

Sub-families
ORTHO020274 (6 genes in 1 species)
ORTHO028010 (4 genes in 1 species)
ORTHO028298 (4 genes in 1 species)
View all sub-families (4)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (2 genes)
ath
Arabidopsis thaliana (2 genes)
bdi
Brachypodium distachyon (1 gene)
fve
Fragaria vesca (1 gene)
gma
Glycine max (23 genes)
lja
Lotus japonicus (1 gene)
mdo
Malus domestica (2 genes)
mes
Manihot esculenta (1 gene)
osa
Oryza sativa ssp. japonica (1 gene)
osaindica
Oryza sativa ssp. indica (1 gene)
ptr
Populus trichocarpa (1 gene)
rco
Ricinus communis (1 gene)
sbi
Sorghum bicolor (1 gene)
smo
Selaginella moellendorffii (1 gene)
tca
Theobroma cacao (1 gene)
vvi
Vitis vinifera (2 genes)
zma
Zea mays (3 genes)



The gene family HOM002894 has 45 genes in 17 species (2 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 3, showing 20 records out of 45 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL3G38910 aly name=Al_scaffold_0003_3766;pid=875125;prot=eq;tid=906638 + scaffold_3 No
AL8G29480 aly name=fgenesh2_kg.8__2296__AT3G28956.1;pid=496480;prot=eq;tid=496480 - scaffold_8 No
AT3G28956 ath RNA polymerase II, Rpb4, core protein; FUNCTIONS IN: DNA-directed RNA polymerase activity, nucleotide binding, catalytic activity; INVOLVED IN: cellular metabolic process, transcription; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: HRDC-like (InterPro:IPR010997), RNA polymerase II, Rpb4 (InterPro:IPR005574), RNA polymerase II, Rpb4, core (InterPro:IPR006590); BEST Arabidopsis thaliana protein match is: RNA polymerase II, Rpb4, core protein (TAIR:AT5G62950.3); Has 159 Blast hits to 159 proteins in 70 species: Archae - 0; Bacteria - 0; Metazoa - 99; Fungi - 17; Plants - 37; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).;RNA polymerase II, Rpb4, core protein transcript=eq;prot=eq; - 3 No
AT5G62950 ath RNA polymerase II, Rpb4, core protein; FUNCTIONS IN: DNA-directed RNA polymerase activity, catalytic activity, nucleotide binding; INVOLVED IN: cellular metabolic process, transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: HRDC-like (InterPro:IPR010997), RNA polymerase II, Rpb4 (InterPro:IPR005574), RNA polymerase II, Rpb4, core (InterPro:IPR006590); BEST Arabidopsis thaliana protein match is: RNA polymerase II, Rpb4, core protein (TAIR:AT3G28956.1); Has 213 Blast hits to 213 proteins in 94 species: Archae - 0; Bacteria - 0; Metazoa - 128; Fungi - 38; Plants - 39; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).;RNA polymerase II, Rpb4, core protein transcript=eq;prot=eq; - 5 No
BD4G07190 bdi G-protein coupled receptor activity (Blast2GO) pid=Bradi4g07190.1;tid=Bradi4g07190.1;GeneName=Bradi4g07190;transcript=eq;prot=eq + Bd4 No
FV4G05800 fve DNA-directed RNA polymerase III subunit RPC9 (RNA polymerase III subunit C9) (probable) transcript=eq;prot=eq;pid=gene28994 + LG4 No
GM00G00500 gma 95 pid=16242824;transcript=eq;prot=eq;name=Glyma0095s00240.1 + scaffold_95 No
GM00G00595 gma 156 pid=16242877;transcript=eq;prot=eq;name=Glyma0156s00210.1 - scaffold_156 No
GM05G22850 gma 05 pid=16259337;transcript=eq;prot=eq;name=Glyma05g22850.1 + Gm05 No
GM08G37970 gma 08 pid=16273116;transcript=eq;prot=eq;name=Glyma08g37970.1 - Gm08 No
GM08G38000 gma 08 pid=16273119;transcript=eq;prot=eq;name=Glyma08g38000.1 - Gm08 No
GM14G23060 gma 14 pid=16295864;transcript=eq;prot=eq;name=Glyma14g23060.1 - Gm14 No
GM16G23950 gma 16 pid=16302702;transcript=eq;prot=eq;name=Glyma16g23950.1 - Gm16 No
GM18G04460 gma 18 pid=16307903;transcript=eq;prot=eq;name=Glyma18g04460.1 - Gm18 No
GM18G34290 gma 18 pid=16309595;transcript=eq;prot=eq;name=Glyma18g34290.1 - Gm18 No
GM18G34350 gma 18 pid=16309601;transcript=eq;prot=eq;name=Glyma18g34350.1 - Gm18 No
GM18G34490 gma 18 pid=16309614;transcript=eq;prot=eq;name=Glyma18g34490.1 + Gm18 No
GM18G34550 gma 18 pid=16309620;transcript=eq;prot=eq;name=Glyma18g34550.1 + Gm18 No
GM18G34610 gma 18 pid=16309625;transcript=eq;prot=eq;name=Glyma18g34610.1 + Gm18 No
GM18G34690 gma 18 pid=16309632;transcript=eq;prot=eq;name=Glyma18g34690.1 + Gm18 No
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