Gene family 
- Id
- HOM002894
- Method
- BLASTP E_value=1e-05 MCL_I=2
- Sequences
- Sub-families
-
ORTHO020274 (6 genes in 1 species)
ORTHO028010 (4 genes in 1 species)
ORTHO028298 (4 genes in 1 species)
View all sub-families (4)
- Keywords
-
Overview of gene family content
- aly
- Arabidopsis lyrata (2 genes)
- ath
- Arabidopsis thaliana (2 genes)
- bdi
- Brachypodium distachyon (1 gene)
- fve
- Fragaria vesca (1 gene)
- gma
- Glycine max (23 genes)
- lja
- Lotus japonicus (1 gene)
- mdo
- Malus domestica (2 genes)
- mes
- Manihot esculenta (1 gene)
- osa
- Oryza sativa ssp. japonica (1 gene)
- osaindica
- Oryza sativa ssp. indica (1 gene)
- ptr
- Populus trichocarpa (1 gene)
- rco
- Ricinus communis (1 gene)
- sbi
- Sorghum bicolor (1 gene)
- smo
- Selaginella moellendorffii (1 gene)
- tca
- Theobroma cacao (1 gene)
- vvi
- Vitis vinifera (2 genes)
- zma
- Zea mays (3 genes)
The gene family HOM002894 has 45 genes in 17 species (2 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:
- gene family : HOM002894
Page 1 of 3, showing 20 records out of 45 total, starting on record 1, ending on 20
| gene_id | species | description | comment | strand | chr | outlier |
|---|---|---|---|---|---|---|
| AL3G38910 | aly | name=Al_scaffold_0003_3766;pid=875125;prot=eq;tid=906638 | + | scaffold_3 | No | |
| AL8G29480 | aly | name=fgenesh2_kg.8__2296__AT3G28956.1;pid=496480;prot=eq;tid=496480 | - | scaffold_8 | No | |
| AT3G28956 | ath | RNA polymerase II, Rpb4, core protein; FUNCTIONS IN: DNA-directed RNA polymerase activity, nucleotide binding, catalytic activity; INVOLVED IN: cellular metabolic process, transcription; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: HRDC-like (InterPro:IPR010997), RNA polymerase II, Rpb4 (InterPro:IPR005574), RNA polymerase II, Rpb4, core (InterPro:IPR006590); BEST Arabidopsis thaliana protein match is: RNA polymerase II, Rpb4, core protein (TAIR:AT5G62950.3); Has 159 Blast hits to 159 proteins in 70 species: Archae - 0; Bacteria - 0; Metazoa - 99; Fungi - 17; Plants - 37; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).;RNA polymerase II, Rpb4, core protein | transcript=eq;prot=eq; | - | 3 | No |
| AT5G62950 | ath | RNA polymerase II, Rpb4, core protein; FUNCTIONS IN: DNA-directed RNA polymerase activity, catalytic activity, nucleotide binding; INVOLVED IN: cellular metabolic process, transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: HRDC-like (InterPro:IPR010997), RNA polymerase II, Rpb4 (InterPro:IPR005574), RNA polymerase II, Rpb4, core (InterPro:IPR006590); BEST Arabidopsis thaliana protein match is: RNA polymerase II, Rpb4, core protein (TAIR:AT3G28956.1); Has 213 Blast hits to 213 proteins in 94 species: Archae - 0; Bacteria - 0; Metazoa - 128; Fungi - 38; Plants - 39; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).;RNA polymerase II, Rpb4, core protein | transcript=eq;prot=eq; | - | 5 | No |
| BD4G07190 | bdi | G-protein coupled receptor activity (Blast2GO) | pid=Bradi4g07190.1;tid=Bradi4g07190.1;GeneName=Bradi4g07190;transcript=eq;prot=eq | + | Bd4 | No |
| FV4G05800 | fve | DNA-directed RNA polymerase III subunit RPC9 (RNA polymerase III subunit C9) (probable) | transcript=eq;prot=eq;pid=gene28994 | + | LG4 | No |
| GM00G00500 | gma | 95 | pid=16242824;transcript=eq;prot=eq;name=Glyma0095s00240.1 | + | scaffold_95 | No |
| GM00G00595 | gma | 156 | pid=16242877;transcript=eq;prot=eq;name=Glyma0156s00210.1 | - | scaffold_156 | No |
| GM05G22850 | gma | 05 | pid=16259337;transcript=eq;prot=eq;name=Glyma05g22850.1 | + | Gm05 | No |
| GM08G37970 | gma | 08 | pid=16273116;transcript=eq;prot=eq;name=Glyma08g37970.1 | - | Gm08 | No |
| GM08G38000 | gma | 08 | pid=16273119;transcript=eq;prot=eq;name=Glyma08g38000.1 | - | Gm08 | No |
| GM14G23060 | gma | 14 | pid=16295864;transcript=eq;prot=eq;name=Glyma14g23060.1 | - | Gm14 | No |
| GM16G23950 | gma | 16 | pid=16302702;transcript=eq;prot=eq;name=Glyma16g23950.1 | - | Gm16 | No |
| GM18G04460 | gma | 18 | pid=16307903;transcript=eq;prot=eq;name=Glyma18g04460.1 | - | Gm18 | No |
| GM18G34290 | gma | 18 | pid=16309595;transcript=eq;prot=eq;name=Glyma18g34290.1 | - | Gm18 | No |
| GM18G34350 | gma | 18 | pid=16309601;transcript=eq;prot=eq;name=Glyma18g34350.1 | - | Gm18 | No |
| GM18G34490 | gma | 18 | pid=16309614;transcript=eq;prot=eq;name=Glyma18g34490.1 | + | Gm18 | No |
| GM18G34550 | gma | 18 | pid=16309620;transcript=eq;prot=eq;name=Glyma18g34550.1 | + | Gm18 | No |
| GM18G34610 | gma | 18 | pid=16309625;transcript=eq;prot=eq;name=Glyma18g34610.1 | + | Gm18 | No |
| GM18G34690 | gma | 18 | pid=16309632;transcript=eq;prot=eq;name=Glyma18g34690.1 | + | Gm18 | No |