Gene family  

Sub-families
ORTHO002402 (32 genes in 24 species)
ORTHO021902 (5 genes in 5 species)
ORTHO036130 (3 genes in 2 species)
View all sub-families (4)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (2 genes)
ath
Arabidopsis thaliana (2 genes)
bdi
Brachypodium distachyon (2 genes)
cpa
Carica papaya (1 gene)
cre
Chlamydomonas reinhardtii (1 gene)
fve
Fragaria vesca (1 gene)
gma
Glycine max (5 genes)
lja
Lotus japonicus (3 genes)
mdo
Malus domestica (1 gene)
mes
Manihot esculenta (2 genes)
mrcc299
Micromonas sp. RCC299 (1 gene)
mtr
Medicago truncatula (3 genes)
olu
Ostreococcus lucimarinus (1 gene)
osa
Oryza sativa ssp. japonica (2 genes)
osaindica
Oryza sativa ssp. indica (2 genes)
ota
Ostreococcus tauri (1 gene)
ppa
Physcomitrella patens (1 gene)
ptr
Populus trichocarpa (4 genes)
rco
Ricinus communis (1 gene)
sbi
Sorghum bicolor (4 genes)
smo
Selaginella moellendorffii (1 gene)
tca
Theobroma cacao (2 genes)
vca
Volvox carteri (1 gene)
vvi
Vitis vinifera (1 gene)
zma
Zea mays (2 genes)



The gene family HOM002721 has 47 genes in 25 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 3, showing 20 records out of 47 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL1G51420 aly name=fgenesh1_pg.C_scaffold_1004299;pid=337734;prot=eq;tid=337734 + scaffold_1 No
AL7G32880 aly name=fgenesh1_pg.C_scaffold_7002750;pid=355577;prot=eq;tid=355577 - scaffold_7 No
AT1G54440 ath Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain; FUNCTIONS IN: 3'-5' exonuclease activity, nucleic acid binding; INVOLVED IN: nucleobase, nucleoside, nucleotide and nucleic acid metabolic process; LOCATED IN: intracellular; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337), 3'-5' exonuclease (InterPro:IPR002562), Helicase/RNase D C-terminal, HRDC domain (InterPro:IPR002121); BEST Arabidopsis thaliana protein match is: Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain (TAIR:AT5G35910.1).;Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain transcript=eq;prot=eq; + 1 No
AT5G35910 ath Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain; FUNCTIONS IN: 3'-5' exonuclease activity, nucleic acid binding; INVOLVED IN: nucleobase, nucleoside, nucleotide and nucleic acid metabolic process; LOCATED IN: intracellular; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337), Helicase/RNase D C-terminal, HRDC domain (InterPro:IPR002121), 3'-5' exonuclease (InterPro:IPR002562); BEST Arabidopsis thaliana protein match is: Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain (TAIR:AT1G54440.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).;Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain transcript=eq;prot=eq; - 5 No
BD1G74597 bdi pid=Bradi1g74597.2;tid=Bradi1g74597.2;GeneName=Bradi1g74597;transcript=eq;prot=eq - Bd1 No
BD3G27252 bdi pid=Bradi3g27252.1;tid=Bradi3g27252.1;GeneName=Bradi3g27252;transcript=eq;prot=eq - Bd3 No
CP00161G00170 cpa name=evm.TU.supercontig_161.17;pid=evm.TU.supercontig_161.17;prot=eq;transcript=eq + supercontig_161 No
CR12G05910 cre name=au.g3315_t1;pid=284930;prot=eq;tid=284937;transcript=eq + chromosome_12 No
FV0G49860 fve Exosome component 10 (PM/Scl-100) (probable) transcript=eq;prot=eq;pid=gene24458 + scf0513033 No
GM05G11200 gma 05 pid=16258856;transcript=eq;prot=eq;name=Glyma05g11200.1 + Gm05 No
GM05G13920 gma 05 pid=16258915;transcript=eq;prot=eq;name=Glyma05g13920.1 - Gm05 No
GM17G24130 gma 17 pid=16306377;transcript=eq;prot=eq;name=Glyma17g24130.1 - Gm17 No
GM19G29260 gma 19 pid=16313167;transcript=eq;prot=eq;name=Glyma19g29260.1 + Gm19 No
GM19G29290 gma 19 pid=16313168;transcript=eq;prot=eq;name=Glyma19g29290.1 + Gm19 No
LJ0G011680 lja partial;prot=eq;transcript=eq;scaffold=LjSGA_008613;name=LjSGA_008613.1 - LjSGA_008613 No
LJ1G042000 lja prot=eq;transcript=eq;scaffold=LjT38H23;name=chr1.LjT38H23.70.nd - chr1 No
LJ1G042090 lja partial;prot=eq;transcript=eq;scaffold=LjT38H23;name=chr1.LjT38H23.160.nd - chr1 No
MD03G011930 mdo transcript=eq;prot=eq;pid=MDP0000142478;tid=MDP0000142478;contig=MDC026199.58 - 3 No
ME02431G00250 mes PACid=17975233;RNAname=cassava4.1_026828m;GeneName=cassava4.1_026828m.g;transcript=eq;prot=eq - scaffold02431 No
ME02431G00260 mes PACid=17975199;RNAname=cassava4.1_007783m;GeneName=cassava4.1_007783m.g;transcript=eq;prot=eq - scaffold02431 No
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