Gene family  

Sub-families
ORTHO005879 (25 genes in 20 species)
ORTHO028423 (4 genes in 4 species)
ORTHO028829 (4 genes in 4 species)
View all sub-families (5)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (2 genes)
ath
Arabidopsis thaliana (2 genes)
bdi
Brachypodium distachyon (2 genes)
cpa
Carica papaya (3 genes)
fve
Fragaria vesca (2 genes)
gma
Glycine max (2 genes)
lja
Lotus japonicus (6 genes)
mdo
Malus domestica (4 genes)
mes
Manihot esculenta (2 genes)
mrcc299
Micromonas sp. RCC299 (1 gene)
mtr
Medicago truncatula (1 gene)
osa
Oryza sativa ssp. japonica (2 genes)
osaindica
Oryza sativa ssp. indica (3 genes)
ppa
Physcomitrella patens (1 gene)
ptr
Populus trichocarpa (2 genes)
rco
Ricinus communis (3 genes)
sbi
Sorghum bicolor (4 genes)
tca
Theobroma cacao (1 gene)
vvi
Vitis vinifera (1 gene)
zma
Zea mays (3 genes)



The gene family HOM002694 has 47 genes in 20 species (3 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 3, showing 20 records out of 47 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL6G02590 aly name=fgenesh2_kg.6__255__AT5G03450.1;pid=487121;prot=eq;tid=487121 - scaffold_6 No
AL6G03020 aly name=fgenesh1_pg.C_scaffold_6000250;pid=349657;prot=eq;tid=349657 + scaffold_6 No
AT5G03450 ath Transducin/WD40 repeat-like superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like-containing domain (InterPro:IPR011046), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G03750.1); Has 6680 Blast hits to 3674 proteins in 290 species: Archae - 4; Bacteria - 114; Metazoa - 3367; Fungi - 525; Plants - 736; Viruses - 186; Other Eukaryotes - 1748 (source: NCBI BLink).;Transducin/WD40 repeat-like superfamily protein transcript=eq;prot=eq; - 5 No
AT5G03750 ath BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT5G03450.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). transcript=eq;prot=eq; + 5 No
BD1G77997 bdi pid=Bradi1g77997.1;tid=Bradi1g77997.1;GeneName=Bradi1g77997;transcript=eq;prot=eq - Bd1 No
BD3G32535 bdi pid=Bradi3g32535.1;tid=Bradi3g32535.1;GeneName=Bradi3g32535;transcript=eq;prot=eq - Bd3 No
CP00053G01410 cpa name=evm.TU.supercontig_53.141;pid=evm.TU.supercontig_53.141;prot=eq;transcript=eq - supercontig_53 Yes
CP00102G00170 cpa name=evm.TU.supercontig_102.18;pid=evm.TU.supercontig_102.18;prot=eq;transcript=eq + supercontig_102 No
CP00102G00190 cpa name=evm.TU.supercontig_102.20;pid=evm.TU.supercontig_102.20;prot=eq;transcript=eq + supercontig_102 No
FV6G49620 fve SKP1-like protein 4 (AtSK4) (similar to) transcript=eq;prot=eq;pid=gene09673 - LG6 No
FV7G21150 fve RING finger and WD repeat domain-containing protein 3 (probable) transcript=eq;prot=eq;pid=gene03076 + LG7 No
GM03G34180 gma 03 pid=16253280;transcript=eq;prot=eq;name=Glyma03g34180.1 - Gm03 No
GM19G36880 gma 19 pid=16314019;transcript=eq;prot=eq;name=Glyma19g36880.1 - Gm19 No
LJ1G049630 lja partial;prot=eq;transcript=eq;scaffold=CM0012;name=chr1.CM0012.30.nd - chr1 No
LJ1G049640 lja partial;prot=eq;transcript=eq;scaffold=CM0012;name=chr1.CM0012.40.nd + chr1 No
LJ1G049750 lja prot=eq;transcript=eq;scaffold=CM0012;name=chr1.CM0012.150.nd - chr1 No
LJ1G049770 lja prot=eq;transcript=eq;scaffold=CM0012;name=chr1.CM0012.170.nd - chr1 No
LJ1G049810 lja partial;prot=eq;transcript=eq;scaffold=CM0012;name=chr1.CM0012.210.nd - chr1 No
LJ1G049840 lja partial;prot=eq;transcript=eq;scaffold=CM0012;name=chr1.CM0012.240.nd - chr1 No
MD00G418340 mdo transcript=eq;prot=eq;pid=MDP0000207303;tid=MDP0000207303;contig=MDC019092.169 + MDC019092.169 No
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