Gene family  

Sub-families
ORTHO009656 (20 genes in 16 species)
ORTHO010404 (19 genes in 17 species)
View all sub-families (2)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (2 genes)
ath
Arabidopsis thaliana (2 genes)
bdi
Brachypodium distachyon (3 genes)
cpa
Carica papaya (2 genes)
fve
Fragaria vesca (3 genes)
gma
Glycine max (2 genes)
lja
Lotus japonicus (1 gene)
mdo
Malus domestica (4 genes)
mes
Manihot esculenta (1 gene)
mtr
Medicago truncatula (1 gene)
osa
Oryza sativa ssp. japonica (3 genes)
osaindica
Oryza sativa ssp. indica (3 genes)
ppa
Physcomitrella patens (2 genes)
ptr
Populus trichocarpa (4 genes)
rco
Ricinus communis (3 genes)
sbi
Sorghum bicolor (2 genes)
smo
Selaginella moellendorffii (1 gene)
tca
Theobroma cacao (2 genes)
vvi
Vitis vinifera (2 genes)
zma
Zea mays (5 genes)



The gene family HOM002678 has 48 genes in 20 species (2 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 3, showing 20 records out of 48 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL1G03770 aly name=scaffold_100401.1;pid=887607;prot=eq;tid=919120 + scaffold_1 Yes
AL8G09920 aly name=fgenesh2_kg.8__645__AT5G47870.1;pid=494829;prot=eq;tid=494829 - scaffold_8 No
AT1G71310 ath cobalt ion binding; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G47870.1); Has 94 Blast hits to 94 proteins in 17 species: Archae - 0; Bacteria - 10; Metazoa - 0; Fungi - 0; Plants - 72; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).;cobalt ion binding transcript=eq;prot=eq; - 1 No
AT5G47870 ath FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: cobalt ion binding (TAIR:AT1G71310.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). transcript=eq;prot=eq; - 5 No
BD1G01500 bdi pid=Bradi1g01500.1;tid=Bradi1g01500.1;GeneName=Bradi1g01500;transcript=eq;prot=eq - Bd1 No
BD2G56682 bdi pid=Bradi2g56682.1;tid=Bradi2g56682.1;GeneName=Bradi2g56682;transcript=eq;prot=eq - Bd2 No
BD4G34970 bdi pid=Bradi4g34970.1;tid=Bradi4g34970.1;GeneName=Bradi4g34970;transcript=eq;prot=eq + Bd4 No
CP00125G00360 cpa name=evm.TU.supercontig_125.36;pid=evm.TU.supercontig_125.36;prot=eq;transcript=eq - supercontig_125 No
CP00249G00120 cpa name=evm.TU.supercontig_249.12;pid=evm.TU.supercontig_249.12;prot=eq;transcript=eq - supercontig_249 No
FV2G16450 fve 3-isopropylmalate dehydratase large subunit (IPMI) (probable) transcript=eq;prot=eq;pid=gene31182 + LG2 No
FV4G06730 fve Cysteine protease ATG4a (Protein autophagy 4a) (probable) transcript=eq;prot=eq;pid=gene29060 + LG4 Yes
FV4G18350 fve Protein disulfide-isomerase 1 (PDI1), Precursor (probable) transcript=eq;prot=eq;pid=gene22759 + LG4 No
GM09G36860 gma 09 pid=16277450;transcript=eq;prot=eq;name=Glyma09g36860.1 + Gm09 No
GM20G39380 gma 20 pid=16318405;transcript=eq;prot=eq;name=Glyma20g39380.1 - Gm20 No
LJ0G459230 lja prot=eq;transcript=eq;scaffold=LjT28A08;name=LjT28A08.80.nc - chr0 No
MD04G005350 mdo transcript=eq;prot=eq;pid=MDP0000551040;tid=MDP0000551040;contig=MDC015111.196 - 4 No
MD05G025950 mdo transcript=eq;prot=eq;pid=MDP0000403195;tid=MDP0000403195;contig=MDC014229.577 + 5 No
MD10G000440 mdo transcript=eq;prot=eq;pid=MDP0000123286;tid=MDP0000123286;contig=MDC007177.155 - 10 No
MD13G011110 mdo transcript=eq;prot=eq;pid=MDP0000460502;tid=MDP0000460502;contig=MDC023674.27 + 13 No
ME10780G00010 mes PACid=17972771;RNAname=cassava4.1_015647m;GeneName=cassava4.1_015647m.g;transcript=ne;prot=eq + scaffold10780 No
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