Gene family  

Sub-families
ORTHO003037 (30 genes in 22 species)
ORTHO040753 (3 genes in 2 species)
ORTHO046717 (2 genes in 2 species)
View all sub-families (4)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (2 genes)
ath
Arabidopsis thaliana (3 genes)
bdi
Brachypodium distachyon (1 gene)
cpa
Carica papaya (1 gene)
cre
Chlamydomonas reinhardtii (1 gene)
fve
Fragaria vesca (1 gene)
gma
Glycine max (2 genes)
lja
Lotus japonicus (2 genes)
mdo
Malus domestica (7 genes)
mes
Manihot esculenta (2 genes)
mrcc299
Micromonas sp. RCC299 (1 gene)
mtr
Medicago truncatula (2 genes)
olu
Ostreococcus lucimarinus (1 gene)
osa
Oryza sativa ssp. japonica (2 genes)
osaindica
Oryza sativa ssp. indica (2 genes)
ota
Ostreococcus tauri (1 gene)
ppa
Physcomitrella patens (1 gene)
ptr
Populus trichocarpa (3 genes)
rco
Ricinus communis (2 genes)
sbi
Sorghum bicolor (1 gene)
smo
Selaginella moellendorffii (1 gene)
tca
Theobroma cacao (4 genes)
vca
Volvox carteri (1 gene)
vvi
Vitis vinifera (2 genes)
zma
Zea mays (2 genes)



The gene family HOM002666 has 48 genes in 25 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 3, showing 20 records out of 48 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL3G37050 aly name=fgenesh2_kg.3__3243__AT2G16530.2;pid=480542;prot=eq;tid=480542 - scaffold_3 No
AL6G37590 aly name=fgenesh2_kg.6__3336__AT2G16530.2;pid=490202;prot=eq;tid=490202 + scaffold_6 No
AT1G72590 ath 3-oxo-5-alpha-steroid 4-dehydrogenase family protein; FUNCTIONS IN: oxidoreductase activity, acting on the CH-CH group of donors, 3-oxo-5-alpha-steroid 4-dehydrogenase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: endomembrane system, integral to membrane, cytoplasm; CONTAINS InterPro DOMAIN/s: 3-oxo-5-alpha-steroid 4-dehydrogenase, C-terminal (InterPro:IPR001104); BEST Arabidopsis thaliana protein match is: 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (TAIR:AT2G16530.1); Has 1090 Blast hits to 1086 proteins in 214 species: Archae - 0; Bacteria - 21; Metazoa - 397; Fungi - 195; Plants - 181; Viruses - 0; Other Eukaryotes - 296 (source: NCBI BLink).;3-oxo-5-alpha-steroid 4-dehydrogenase family protein transcript=eq;prot=eq; + 1 No
AT2G16530 ath 3-oxo-5-alpha-steroid 4-dehydrogenase family protein; FUNCTIONS IN: oxidoreductase activity, acting on the CH-CH group of donors, 3-oxo-5-alpha-steroid 4-dehydrogenase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: callus; CONTAINS InterPro DOMAIN/s: 3-oxo-5-alpha-steroid 4-dehydrogenase, C-terminal (InterPro:IPR001104); BEST Arabidopsis thaliana protein match is: 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (TAIR:AT1G72590.1); Has 1047 Blast hits to 1045 proteins in 211 species: Archae - 0; Bacteria - 24; Metazoa - 384; Fungi - 161; Plants - 181; Viruses - 0; Other Eukaryotes - 297 (source: NCBI BLink).;3-oxo-5-alpha-steroid 4-dehydrogenase family protein transcript=eq;prot=eq; - 2 No
AT3G43840 ath 3-oxo-5-alpha-steroid 4-dehydrogenase family protein; FUNCTIONS IN: oxidoreductase activity, acting on the CH-CH group of donors; INVOLVED IN: lipid metabolic process; LOCATED IN: endomembrane system, integral to membrane, cytoplasm; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: 3-oxo-5-alpha-steroid 4-dehydrogenase, C-terminal (InterPro:IPR001104); BEST Arabidopsis thaliana protein match is: 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (TAIR:AT2G16530.2); Has 145 Blast hits to 145 proteins in 33 species: Archae - 0; Bacteria - 2; Metazoa - 68; Fungi - 0; Plants - 49; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink).;3-oxo-5-alpha-steroid 4-dehydrogenase family protein transcript=eq;prot=eq; + 3 No
BD5G19010 bdi 3-oxo-5-alpha-steroid 4-dehydrogenase activity (Blast2GO) pid=Bradi5g19010.1;tid=Bradi5g19010.1;GeneName=Bradi5g19010;transcript=eq;prot=eq + Bd5 No
CP00150G00100 cpa name=evm.TU.supercontig_150.10;pid=evm.TU.supercontig_150.10;prot=eq;transcript=eq + supercontig_150 No
CR17G05240 cre name=estExt_fgenesh2_pg.C_320031;pid=192416;prot=eq;tid=192416;transcript=eq + chromosome_17 No
FV2G17500 fve 3-oxo-5-alpha-steroid 4-dehydrogenase 3 (probable) transcript=eq;prot=eq;pid=gene01677 - LG2 No
GM11G11780 gma 11 pid=16283549;transcript=eq;prot=eq;name=Glyma11g11780.1 - Gm11 No
GM12G04070 gma 12 pid=16286326;transcript=eq;prot=eq;name=Glyma12g04070.1 + Gm12 No
LJ0G242450 lja partial;prot=eq;transcript=eq;scaffold=LjSGA_080126;name=LjSGA_080126.1 - LjSGA_080126 No
LJ0G329760 lja partial;prot=eq;transcript=eq;scaffold=LjSGA_116558;name=LjSGA_116558.0.1 + LjSGA_116558 No
MD00G027640 mdo transcript=eq;prot=eq;pid=MDP0000165170;tid=MDP0000165170;contig=MDC001176.164 + MDC001176.164 No
MD00G027660 mdo transcript=eq;prot=eq;pid=MDP0000268406;tid=MDP0000268406;contig=MDC001176.172 + MDC001176.172 No
MD00G027700 mdo transcript=eq;prot=eq;pid=MDP0000119523;tid=MDP0000119523;contig=MDC001176.174 + MDC001176.174 No
MD00G076090 mdo transcript=eq;prot=eq;pid=MDP0000271970;tid=MDP0000271970;contig=MDC003170.318 + MDC003170.318 No
MD00G367310 mdo transcript=eq;prot=eq;pid=MDP0000140225;tid=MDP0000140225;contig=MDC016587.257 - MDC016587.257 No
MD00G497040 mdo transcript=eq;prot=eq;pid=MDP0000133307;tid=MDP0000133307;contig=MDC025549.16 - MDC025549.16 No
MD10G008460 mdo transcript=eq;prot=eq;pid=MDP0000171374;tid=MDP0000171374;contig=MDC003170.451 + 10 No
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