Gene family  

Sub-families
ORTHO007498 (23 genes in 14 species)
ORTHO009144 (20 genes in 14 species)
View all sub-families (2)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (2 genes)
ath
Arabidopsis thaliana (2 genes)
bdi
Brachypodium distachyon (3 genes)
cpa
Carica papaya (2 genes)
cre
Chlamydomonas reinhardtii (1 gene)
fve
Fragaria vesca (4 genes)
gma
Glycine max (4 genes)
mdo
Malus domestica (6 genes)
mes
Manihot esculenta (2 genes)
olu
Ostreococcus lucimarinus (1 gene)
osaindica
Oryza sativa ssp. indica (2 genes)
ppa
Physcomitrella patens (2 genes)
ptr
Populus trichocarpa (3 genes)
rco
Ricinus communis (2 genes)
sbi
Sorghum bicolor (2 genes)
smo
Selaginella moellendorffii (1 gene)
tca
Theobroma cacao (3 genes)
vca
Volvox carteri (1 gene)
vvi
Vitis vinifera (2 genes)
zma
Zea mays (3 genes)



The gene family HOM002653 has 48 genes in 20 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 3, showing 20 records out of 48 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL1G13810 aly name=fgenesh2_kg.1__1426__AT1G13190.1;pid=471472;prot=eq;tid=471472 + scaffold_1 No
AL8G21080 aly name=fgenesh2_kg.8__1470__AT5G55670.1;pid=495654;prot=eq;tid=495654 - scaffold_8 No
AT1G13190 ath RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT5G55670.1); Has 32447 Blast hits to 17825 proteins in 1064 species: Archae - 7; Bacteria - 12227; Metazoa - 10368; Fungi - 2543; Plants - 3608; Viruses - 174; Other Eukaryotes - 3520 (source: NCBI BLink).;RNA-binding (RRM/RBD/RNP motifs) family protein transcript=eq;prot=eq; + 1 No
AT5G55670 ath RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT1G13190.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).;RNA-binding (RRM/RBD/RNP motifs) family protein transcript=eq;prot=eq; - 5 No
BD3G38990 bdi single-stranded DNA binding (Blast2GO) pid=Bradi3g38990.1;tid=Bradi3g38990.1;GeneName=Bradi3g38990;transcript=eq;prot=eq - Bd3 No
BD4G33020 bdi RRM domain containing protein similar to RNA recognition motif (RRM)-containing protein, [Arabidopsis thaliana] AT5G55670 pid=Bradi4g33020.1;tid=Bradi4g33020.1;GeneName=Bradi4g33020;transcript=eq;prot=eq - Bd4 No
BD5G12840 bdi RRM domain containing protein similar to RNA recognition motif family protein, [Oryza sativa] LOC_Os04g39250 pid=Bradi5g12840.1;tid=Bradi5g12840.1;GeneName=Bradi5g12840;transcript=eq;prot=eq - Bd5 No
CP00012G01530 cpa name=evm.TU.supercontig_12.153;pid=evm.TU.supercontig_12.153;prot=eq;transcript=eq + supercontig_12 No
CP00033G00780 cpa name=evm.TU.supercontig_33.78;pid=evm.TU.supercontig_33.78;prot=eq;transcript=eq + supercontig_33 No
CR08G05450 cre name=pasa_Sanger_mRNA32160;pid=390936;prot=eq;tid=422672;transcript=eq - chromosome_8 No
FV0G11270 fve Multiple RNA-binding domain-containing protein 1 (probable) transcript=eq;prot=eq;pid=gene06969 + scf0513160 No
FV0G11280 fve Cleavage and polyadenylation specificity factor subunit 7 (probable) transcript=eq;prot=eq;pid=gene06970 + scf0513160 No
FV2G49810 fve Homeotic protein empty spiracles (probable) transcript=eq;prot=eq;pid=gene15251 + LG2 No
FV2G49950 fve Cleavage and polyadenylation specificity factor subunit CG7185 (probable) transcript=eq;prot=eq;pid=gene15240 + LG2 No
GM08G44150 gma 08 pid=16273779;transcript=eq;prot=eq;name=Glyma08g44150.1 - Gm08 No
GM08G44170 gma 08 pid=16273781;transcript=eq;prot=eq;name=Glyma08g44170.1 - Gm08 No
GM18G08590 gma 18 pid=16308311;transcript=eq;prot=eq;name=Glyma18g08590.1 + Gm18 No
GM18G08610 gma 18 pid=16308312;transcript=eq;prot=eq;name=Glyma18g08610.1 + Gm18 No
MD00G008920 mdo transcript=eq;prot=eq;pid=MDP0000643975;tid=MDP0000643975;contig=MDC000337.406 - MDC000337.406 No
MD00G008930 mdo transcript=eq;prot=eq;pid=MDP0000162382;tid=MDP0000162382;contig=MDC000337.408 - MDC000337.408 No
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