Gene family  

Sub-families
ORTHO007279 (23 genes in 19 species)
ORTHO031573 (3 genes in 1 species)
ORTHO041439 (2 genes in 2 species)
View all sub-families (7)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (13 genes)
ath
Arabidopsis thaliana (8 genes)
bdi
Brachypodium distachyon (1 gene)
cpa
Carica papaya (1 gene)
fve
Fragaria vesca (1 gene)
gma
Glycine max (2 genes)
lja
Lotus japonicus (1 gene)
mdo
Malus domestica (2 genes)
mes
Manihot esculenta (1 gene)
mtr
Medicago truncatula (1 gene)
osa
Oryza sativa ssp. japonica (2 genes)
osaindica
Oryza sativa ssp. indica (3 genes)
ppa
Physcomitrella patens (3 genes)
ptr
Populus trichocarpa (1 gene)
rco
Ricinus communis (1 gene)
sbi
Sorghum bicolor (1 gene)
smo
Selaginella moellendorffii (1 gene)
tca
Theobroma cacao (2 genes)
vvi
Vitis vinifera (1 gene)
zma
Zea mays (3 genes)



The gene family HOM002599 has 49 genes in 20 species (1 outlier gene).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
This page uses the Flash plugin.




Index of genes with 1 constraints:

Page 1 of 3, showing 20 records out of 49 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL1G00640 aly name=scaffold_100076.1;pid=887282;prot=eq;tid=918795 + scaffold_1 No
AL3G30990 aly name=Al_scaffold_0003_2989;pid=874348;prot=eq;tid=905861 - scaffold_3 No
AL4G06310 aly name=scaffold_400645.1;pid=901144;prot=eq;tid=932657 + scaffold_4 No
AL4G06330 aly name=scaffold_400646.1;pid=901145;prot=eq;tid=932658 + scaffold_4 No
AL4G06360 aly name=scaffold_400649.1;pid=901148;prot=eq;tid=932661 + scaffold_4 No
AL4G27320 aly name=scaffold_402837.1;pid=903336;prot=eq;tid=934849 - scaffold_4 No
AL4G27330 aly name=fgenesh1_pg.C_scaffold_4002184;pid=345842;prot=eq;tid=345842 - scaffold_4 No
AL5G26490 aly name=fgenesh1_pg.C_scaffold_5002100;pid=348708;prot=eq;tid=348708 - scaffold_5 No
AL6G41200 aly name=scaffold_604259.1;pid=912202;prot=eq;tid=943715 + scaffold_6 No
AL8G10270 aly name=Al_scaffold_0008_978;pid=884714;prot=eq;tid=916227 - scaffold_8 No
AL8G11350 aly name=fgenesh1_pg.C_scaffold_8000843;pid=357056;prot=eq;tid=357056 + scaffold_8 No
AL8G11370 aly name=Al_scaffold_0008_1100;pid=884836;prot=eq;tid=916349 - scaffold_8 No
AL8G21970 aly name=fgenesh1_pm.C_scaffold_8001293;pid=331950;prot=eq;tid=331950 + scaffold_8 No
AT1G01640 ath Putative role in flower development. Comparison of SALK_011721C to Columbia wild type resulted in a trend toward earlier flowering in the mutant (P=0.1) (Stapleton and Woodruff 2009, personal communication).;BTB/POZ domain-containing protein transcript=eq;prot=eq; - 1 No
AT2G05330 ath BTB/POZ domain-containing protein; CONTAINS InterPro DOMAIN/s: BTB/POZ (InterPro:IPR013069), BTB/POZ fold (InterPro:IPR011333), Kelch related (InterPro:IPR013089), BTB/POZ-like (InterPro:IPR000210); BEST Arabidopsis thaliana protein match is: BTB/POZ domain-containing protein (TAIR:AT5G48510.1); Has 688 Blast hits to 688 proteins in 73 species: Archae - 0; Bacteria - 0; Metazoa - 321; Fungi - 0; Plants - 341; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink).;BTB/POZ domain-containing protein transcript=eq;prot=eq; - 2 No
AT2G40440 ath BTB/POZ domain-containing protein; CONTAINS InterPro DOMAIN/s: BTB/POZ (InterPro:IPR013069), BTB/POZ fold (InterPro:IPR011333), Kelch related (InterPro:IPR013089), BTB/POZ-like (InterPro:IPR000210); BEST Arabidopsis thaliana protein match is: BTB/POZ domain-containing protein (TAIR:AT2G40450.1); Has 178 Blast hits to 120 proteins in 24 species: Archae - 0; Bacteria - 0; Metazoa - 9; Fungi - 0; Plants - 166; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).;BTB/POZ domain-containing protein transcript=eq;prot=eq; - 2 No
AT2G40450 ath BTB/POZ domain-containing protein; CONTAINS InterPro DOMAIN/s: BTB/POZ (InterPro:IPR013069), BTB/POZ fold (InterPro:IPR011333), Kelch related (InterPro:IPR013089), BTB/POZ-like (InterPro:IPR000210); BEST Arabidopsis thaliana protein match is: BTB/POZ domain-containing protein (TAIR:AT5G48510.1); Has 2290 Blast hits to 2270 proteins in 133 species: Archae - 0; Bacteria - 0; Metazoa - 1375; Fungi - 7; Plants - 741; Viruses - 43; Other Eukaryotes - 124 (source: NCBI BLink).;BTB/POZ domain-containing protein transcript=eq;prot=eq; - 2 No
AT3G29740 ath BTB/POZ domain-containing protein; CONTAINS InterPro DOMAIN/s: BTB/POZ (InterPro:IPR013069), BTB/POZ fold (InterPro:IPR011333), Kelch related (InterPro:IPR013089), BTB/POZ-like (InterPro:IPR000210); BEST Arabidopsis thaliana protein match is: BTB/POZ domain-containing protein (TAIR:AT2G40440.1); Has 51 Blast hits to 48 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 51; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).;BTB/POZ domain-containing protein transcript=eq;prot=eq; + 3 No
AT3G56230 ath BTB/POZ domain-containing protein; CONTAINS InterPro DOMAIN/s: BTB/POZ (InterPro:IPR013069), BTB/POZ fold (InterPro:IPR011333), Kelch related (InterPro:IPR013089), BTB/POZ-like (InterPro:IPR000210); BEST Arabidopsis thaliana protein match is: BTB/POZ domain-containing protein (TAIR:AT1G01640.2); Has 5225 Blast hits to 5141 proteins in 152 species: Archae - 0; Bacteria - 0; Metazoa - 3910; Fungi - 3; Plants - 1048; Viruses - 41; Other Eukaryotes - 223 (source: NCBI BLink).;BTB/POZ domain-containing protein transcript=eq;prot=eq; - 3 No
AT4G04090 ath BTB/POZ domain-containing protein; CONTAINS InterPro DOMAIN/s: BTB/POZ (InterPro:IPR013069), BTB/POZ fold (InterPro:IPR011333), Kelch related (InterPro:IPR013089), BTB/POZ-like (InterPro:IPR000210); BEST Arabidopsis thaliana protein match is: BTB/POZ domain-containing protein (TAIR:AT2G40450.1); Has 1656 Blast hits to 1653 proteins in 96 species: Archae - 0; Bacteria - 0; Metazoa - 1061; Fungi - 0; Plants - 524; Viruses - 5; Other Eukaryotes - 66 (source: NCBI BLink).;BTB/POZ domain-containing protein transcript=eq;prot=eq; + 4 No
<< previous
1 | 2 | 3 next >>

Download genes

Include following columns
gene_id
species
description
comment
strand
chr
outlier