Gene family  

Sub-families
ORTHO002885 (30 genes in 23 species)
ORTHO017062 (8 genes in 7 species)
ORTHO045757 (2 genes in 2 species)
View all sub-families (3)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (5 genes)
ath
Arabidopsis thaliana (4 genes)
bdi
Brachypodium distachyon (2 genes)
cpa
Carica papaya (2 genes)
cre
Chlamydomonas reinhardtii (1 gene)
fve
Fragaria vesca (1 gene)
gma
Glycine max (4 genes)
lja
Lotus japonicus (2 genes)
mdo
Malus domestica (2 genes)
mes
Manihot esculenta (1 gene)
mrcc299
Micromonas sp. RCC299 (2 genes)
mtr
Medicago truncatula (2 genes)
olu
Ostreococcus lucimarinus (2 genes)
osa
Oryza sativa ssp. japonica (2 genes)
osaindica
Oryza sativa ssp. indica (1 gene)
ota
Ostreococcus tauri (1 gene)
ptr
Populus trichocarpa (3 genes)
rco
Ricinus communis (2 genes)
sbi
Sorghum bicolor (2 genes)
smo
Selaginella moellendorffii (2 genes)
tca
Theobroma cacao (1 gene)
vca
Volvox carteri (1 gene)
vvi
Vitis vinifera (1 gene)
zma
Zea mays (3 genes)



The gene family HOM002594 has 49 genes in 24 species (7 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 3, showing 20 records out of 49 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL0G05780 aly name=fgenesh2_kg.185__1__AT1G55460.1;pid=497310;prot=eq;tid=497310 - scaffold_185 No
AL1G50010 aly name=fgenesh2_kg.1__4555__AT1G55460.1;pid=474601;prot=eq;tid=474601 + scaffold_1 No
AL1G50020 aly name=scaffold_105335.1;pid=892541;prot=eq;tid=924054 + scaffold_1 No
AL1G50030 aly name=Al_scaffold_0001_4925;pid=883158;prot=eq;tid=914671 + scaffold_1 No
AL7G16010 aly name=Al_scaffold_0007_1532;pid=858033;prot=eq;tid=889546 + scaffold_7 Yes
AT1G55460 ath DNA/RNA-binding protein Kin17, conserved region; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), DNA/RNA-binding protein Kin17, conserved region (InterPro:IPR019447), KOW (InterPro:IPR005824); BEST Arabidopsis thaliana protein match is: DNA/RNA-binding protein Kin17, conserved region (TAIR:AT5G51795.1); Has 1885 Blast hits to 1561 proteins in 251 species: Archae - 4; Bacteria - 25; Metazoa - 715; Fungi - 242; Plants - 160; Viruses - 13; Other Eukaryotes - 726 (source: NCBI BLink).;DNA/RNA-binding protein Kin17, conserved region transcript=eq;prot=eq; + 1 No
AT4G26055 ath unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G57080.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). transcript=eq;prot=eq; - 4 Yes
AT5G51795 ath DNA/RNA-binding protein Kin17, conserved region; CONTAINS InterPro DOMAIN/s: DNA/RNA-binding protein Kin17, conserved region (InterPro:IPR019447); BEST Arabidopsis thaliana protein match is: DNA/RNA-binding protein Kin17, conserved region (TAIR:AT1G55460.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).;DNA/RNA-binding protein Kin17, conserved region transcript=eq;prot=eq; - 5 No
AT5G57080 ath unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 7 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G26055.1); Has 14 Blast hits to 14 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 14; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). transcript=eq;prot=eq; + 5 Yes
BD2G62390 bdi pid=Bradi2g62390.1;tid=Bradi2g62390.1;GeneName=Bradi2g62390;transcript=eq;prot=eq - Bd2 Yes
BD3G03680 bdi double-stranded DNA binding, zinc ion binding (Blast2GO) pid=Bradi3g03680.1;tid=Bradi3g03680.1;GeneName=Bradi3g03680;transcript=eq;prot=eq - Bd3 No
CP00001G03870 cpa name=evm.TU.supercontig_1.387;pid=evm.TU.supercontig_1.387;prot=eq;transcript=eq + supercontig_1 No
CP00080G00540 cpa name=evm.TU.supercontig_80.54;pid=evm.TU.supercontig_80.54;prot=eq;transcript=eq - supercontig_80 No
CR16G01450 cre name=estExt_fgenesh1_pm.C_390001;pid=24364;prot=eq;tid=24364;transcript=eq + chromosome_16 No
FV4G24350 fve Small acidic protein (probable) transcript=eq;prot=eq;pid=gene00895 - LG4 Yes
GM02G10180 gma 02 pid=16247593;transcript=eq;prot=eq;name=Glyma02g10180.1 - Gm02 No
GM02G45820 gma 02 pid=16250315;transcript=eq;prot=eq;name=Glyma02g45820.1 - Gm02 No
GM14G02960 gma 14 pid=16294162;transcript=eq;prot=eq;name=Glyma14g02960.1 + Gm14 No
GM18G52770 gma 18 pid=16311271;transcript=eq;prot=eq;name=Glyma18g52770.1 + Gm18 No
LJ0G063510 lja partial;prot=eq;transcript=eq;scaffold=LjSGA_022364;name=LjSGA_022364.1 - LjSGA_022364 No
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