Gene family  

Sub-families
ORTHO003271 (29 genes in 24 species)
ORTHO032918 (3 genes in 3 species)
ORTHO041032 (3 genes in 1 species)
View all sub-families (4)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (2 genes)
ath
Arabidopsis thaliana (2 genes)
bdi
Brachypodium distachyon (3 genes)
cpa
Carica papaya (1 gene)
cre
Chlamydomonas reinhardtii (1 gene)
fve
Fragaria vesca (3 genes)
gma
Glycine max (3 genes)
lja
Lotus japonicus (2 genes)
mdo
Malus domestica (2 genes)
mes
Manihot esculenta (1 gene)
mtr
Medicago truncatula (2 genes)
olu
Ostreococcus lucimarinus (1 gene)
osa
Oryza sativa ssp. japonica (2 genes)
osaindica
Oryza sativa ssp. indica (2 genes)
ota
Ostreococcus tauri (1 gene)
ppa
Physcomitrella patens (1 gene)
ptr
Populus trichocarpa (2 genes)
rco
Ricinus communis (1 gene)
sbi
Sorghum bicolor (1 gene)
smo
Selaginella moellendorffii (4 genes)
tca
Theobroma cacao (3 genes)
vca
Volvox carteri (1 gene)
vvi
Vitis vinifera (1 gene)
zma
Zea mays (7 genes)



The gene family HOM002578 has 49 genes in 24 species (1 outlier gene).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 3, showing 20 records out of 49 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL1G03240 aly name=fgenesh1_pg.C_scaffold_1000279;pid=333714;prot=eq;tid=333714 + scaffold_1 No
AL4G22320 aly name=scaffold_402304.1;pid=902803;prot=eq;tid=934316 + scaffold_4 No
AT1G03910 ath EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cactin protein, cactus-binding domain, C-terminal (InterPro:IPR019134), Cactin, central region (InterPro:IPR018816); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G36815.2). transcript=eq;prot=eq; + 1 No
AT2G36815 ath FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cactin, central region (InterPro:IPR018816); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G03910.2); Has 53 Blast hits to 53 proteins in 24 species: Archae - 0; Bacteria - 0; Metazoa - 6; Fungi - 12; Plants - 32; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink). transcript=eq;prot=eq; + 2 No
BD1G05170 bdi protein serine/threonine kinase activity (Blast2GO) pid=Bradi1g05170.1;tid=Bradi1g05170.1;GeneName=Bradi1g05170;transcript=eq;prot=eq - Bd1 No
BD2G34370 bdi pid=Bradi2g34370.1;tid=Bradi2g34370.1;GeneName=Bradi2g34370;transcript=eq;prot=eq + Bd2 No
BD5G18070 bdi pid=Bradi5g18070.1;tid=Bradi5g18070.1;GeneName=Bradi5g18070;transcript=eq;prot=eq - Bd5 No
CP00005G01150 cpa name=evm.TU.supercontig_5.115;pid=evm.TU.supercontig_5.115;prot=eq;transcript=eq - supercontig_5 No
CR09G02660 cre name=pasa_Sanger_mRNA33283;pid=399513;prot=eq;tid=423805;transcript=eq - chromosome_9 No
FV0G35970 fve hypothetical protein transcript=eq;prot=eq;pid=gene11333 - scf0513146 No
FV6G19760 fve Putative DNA helicase INO80 (probable) transcript=eq;prot=eq;pid=gene30086 + LG6 No
FV6G45290 fve hypothetical protein transcript=eq;prot=eq;pid=gene00942 - LG6 No
GM03G34590 gma 03 pid=16253322;transcript=eq;prot=eq;name=Glyma03g34590.1 + Gm03 No
GM13G21200 gma 13 pid=16291049;transcript=eq;prot=eq;name=Glyma13g21200.1 + Gm13 No
GM19G37280 gma 19 pid=16314069;transcript=eq;prot=eq;name=Glyma19g37280.1 + Gm19 No
LJ0G154880 lja prot=eq;transcript=eq;scaffold=LjSGA_048570;name=LjSGA_048570.2 - LjSGA_048570 No
LJ0G209760 lja partial;prot=eq;transcript=eq;scaffold=LjSGA_067526;name=LjSGA_067526.1 - LjSGA_067526 No
MD00G164490 mdo transcript=eq;prot=eq;pid=MDP0000319175;tid=MDP0000319175;contig=MDC007047.429 + MDC007047.429 No
MD14G011610 mdo transcript=eq;prot=eq;pid=MDP0000283465;tid=MDP0000283465;contig=MDC007047.427 - 14 No
ME06550G00040 mes PACid=17961085;RNAname=cassava4.1_002996m;GeneName=cassava4.1_002996m.g;transcript=eq;prot=eq + scaffold06550 No
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