Gene family  

Sub-families
ORTHO005830 (25 genes in 23 species)
ORTHO016505 (8 genes in 1 species)
ORTHO045414 (2 genes in 2 species)
View all sub-families (5)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (18 genes)
ath
Arabidopsis thaliana (2 genes)
bdi
Brachypodium distachyon (1 gene)
cre
Chlamydomonas reinhardtii (1 gene)
fve
Fragaria vesca (1 gene)
gma
Glycine max (4 genes)
lja
Lotus japonicus (3 genes)
mdo
Malus domestica (2 genes)
mes
Manihot esculenta (1 gene)
mrcc299
Micromonas sp. RCC299 (2 genes)
mtr
Medicago truncatula (1 gene)
olu
Ostreococcus lucimarinus (2 genes)
osa
Oryza sativa ssp. japonica (1 gene)
osaindica
Oryza sativa ssp. indica (1 gene)
ota
Ostreococcus tauri (1 gene)
ppa
Physcomitrella patens (1 gene)
ptr
Populus trichocarpa (1 gene)
rco
Ricinus communis (1 gene)
sbi
Sorghum bicolor (1 gene)
tca
Theobroma cacao (1 gene)
vca
Volvox carteri (1 gene)
vvi
Vitis vinifera (2 genes)
zma
Zea mays (1 gene)



The gene family HOM002553 has 50 genes in 23 species (3 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 3, showing 20 records out of 50 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL0G00970 aly name=Al_scaffold_0009_102;pid=883620;prot=eq;tid=915133 + scaffold_9 No
AL0G01840 aly name=fgenesh2_kg.9__109__AT2G07110.1;pid=497144;prot=eq;tid=497144 + scaffold_9 No
AL1G43320 aly name=scaffold_104590.1;pid=891796;prot=eq;tid=923309 + scaffold_1 No
AL1G49500 aly name=fgenesh2_kg.1__4510__AT2G07110.1;pid=474556;prot=eq;tid=474556 - scaffold_1 No
AL2G07720 aly name=fgenesh2_kg.2__572__AT2G07110.1;pid=475442;prot=eq;tid=475442 - scaffold_2 No
AL2G13420 aly name=fgenesh2_kg.2__870__AT2G07110.1;pid=475740;prot=eq;tid=475740 + scaffold_2 No
AL2G18780 aly name=Al_scaffold_0002_1701;pid=877107;prot=eq;tid=908620 + scaffold_2 No
AL4G09090 aly name=Al_scaffold_0004_881;pid=868718;prot=eq;tid=900231 - scaffold_4 No
AL4G11840 aly name=fgenesh1_pm.C_scaffold_4000629;pid=320572;prot=eq;tid=320572 + scaffold_4 No
AL4G28520 aly name=Al_scaffold_0004_2766;pid=870603;prot=eq;tid=902116 + scaffold_4 No
AL5G11040 aly name=fgenesh2_kg.5__792__AT2G07110.1;pid=484800;prot=eq;tid=484800 + scaffold_5 No
AL5G14560 aly name=fgenesh2_kg.5__994__AT3G46210.3;pid=485002;prot=eq;tid=485002 - scaffold_5 No
AL6G36950 aly name=fgenesh2_kg.6__3282__AT2G07110.1;pid=490148;prot=eq;tid=490148 + scaffold_6 No
AL7G13920 aly name=fgenesh2_kg.7__1419__AT2G07110.1;pid=491986;prot=eq;tid=491986 - scaffold_7 No
AL7G36590 aly name=fgenesh2_kg.7__3297__AT2G07110.1;pid=493864;prot=eq;tid=493864 + scaffold_7 No
AL7G38010 aly name=Al_scaffold_0007_3689;pid=860190;prot=eq;tid=891703 - scaffold_7 No
AL8G07410 aly name=fgenesh2_kg.8__512__AT2G07110.1;pid=494696;prot=eq;tid=494696 - scaffold_8 No
AL8G24280 aly name=fgenesh2_kg.8__1773__AT2G07110.1;pid=495957;prot=eq;tid=495957 + scaffold_8 No
AT2G07110 ath BEST Arabidopsis thaliana protein match is: Ribosomal protein S5 domain 2-like superfamily protein (TAIR:AT3G46210.6); Has 82 Blast hits to 82 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 75; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink). transcript=eq;prot=eq; - 2 No
AT3G46210 ath Ribosomal protein S5 domain 2-like superfamily protein; FUNCTIONS IN: 3'-5'-exoribonuclease activity, RNA binding; INVOLVED IN: RNA processing; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Exoribonuclease, phosphorolytic domain 1 (InterPro:IPR001247), Ribosomal protein S5 domain 2-type fold (InterPro:IPR020568); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G07110.1); Has 6526 Blast hits to 6524 proteins in 2015 species: Archae - 242; Bacteria - 4366; Metazoa - 314; Fungi - 210; Plants - 230; Viruses - 0; Other Eukaryotes - 1164 (source: NCBI BLink).;Ribosomal protein S5 domain 2-like superfamily protein transcript=eq;prot=eq; - 3 No
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