Gene family 
- Id
- HOM002547
- Method
- BLASTP E_value=1e-05 MCL_I=2
- Sequences
- Sub-families
-
ORTHO001224 (40 genes in 19 species)
ORTHO069057 (2 genes in 2 species)
View all sub-families (2)
- Keywords
-
Overview of gene family content
- aly
- Arabidopsis lyrata (2 genes)
- ath
- Arabidopsis thaliana (2 genes)
- bdi
- Brachypodium distachyon (1 gene)
- cpa
- Carica papaya (2 genes)
- fve
- Fragaria vesca (1 gene)
- gma
- Glycine max (2 genes)
- lja
- Lotus japonicus (2 genes)
- mdo
- Malus domestica (3 genes)
- mes
- Manihot esculenta (2 genes)
- osa
- Oryza sativa ssp. japonica (9 genes)
- osaindica
- Oryza sativa ssp. indica (9 genes)
- ppa
- Physcomitrella patens (2 genes)
- ptr
- Populus trichocarpa (1 gene)
- rco
- Ricinus communis (2 genes)
- sbi
- Sorghum bicolor (4 genes)
- smo
- Selaginella moellendorffii (1 gene)
- tca
- Theobroma cacao (1 gene)
- vvi
- Vitis vinifera (2 genes)
- zma
- Zea mays (2 genes)
The gene family HOM002547 has 50 genes in 19 species (5 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
This page uses the Flash plugin.
Toolbox
Explore
- ...the local gene organization for homologous genes.
- ...the phylogenetic trees of this gene family.
- ...the expansion/depletion of species in this gene family.
View
- ...the multiple sequence alignment of the homologous gene family.
- ...the similarity heatmap of this gene family.
- ...the genome wide organization of this gene family.
- ...the functional annotation associated with this gene family.
Index of genes with 1 constraints:
- gene family : HOM002547
Page 1 of 3, showing 20 records out of 50 total, starting on record 1, ending on 20
| gene_id | species | description | comment | strand | chr | outlier |
|---|---|---|---|---|---|---|
| AL1G24640 | aly | name=fgenesh2_kg.1__2505__AT1G23010.1;pid=472551;prot=eq;tid=472551 | + | scaffold_1 | No | |
| AL2G19740 | aly | name=fgenesh2_kg.2__1366__AT1G71040.1;pid=476236;prot=eq;tid=476236 | - | scaffold_2 | No | |
| AT1G23010 | ath | Encodes a protein with multicopper oxidase activity. Located in ER. Function together with LPR2 (AT1G71040) and a P5-type ATPase (At5g23630/PDR2) in a common pathway that adjusts root meristem activity to Pi (inorganic phosphate) availability.;Cupredoxin superfamily protein | transcript=eq;prot=eq; | + | 1 | No |
| AT1G71040 | ath | Encodes LPR2. Function together with LPR1 (AT1G23010) and a P5-type ATPase (At5g23630/PDR2) in a common pathway that adjusts root meristem activity to Pi (inorganic phosphate) availability.;Cupredoxin superfamily protein | transcript=eq;prot=eq; | - | 1 | No |
| BD2G01850 | bdi | copper ion binding (Blast2GO) | pid=Bradi2g01850.1;tid=Bradi2g01850.1;GeneName=Bradi2g01850;transcript=eq;prot=eq | - | Bd2 | No |
| CP00065G01200 | cpa | name=evm.TU.supercontig_65.120;pid=evm.TU.supercontig_65.120;prot=eq;transcript=eq | + | supercontig_65 | No | |
| CP00211G00030 | cpa | name=evm.TU.supercontig_211.3;pid=evm.TU.supercontig_211.3;prot=eq;transcript=eq | + | supercontig_211 | No | |
| FV0G06450 | fve | Spore coat protein A (probable) | transcript=eq;prot=eq;pid=gene04054 | + | scf0513158 | No |
| GM10G41010 | gma | 10 | pid=16281698;transcript=eq;prot=eq;name=Glyma10g41010.1 | - | Gm10 | No |
| GM20G26270 | gma | 20 | pid=16316892;transcript=eq;prot=eq;name=Glyma20g26270.1 | + | Gm20 | No |
| LJ5G029200 | lja | prot=eq;transcript=eq;scaffold=CM0200;name=chr5.CM0200.1600.nc | - | chr5 | No | |
| LJ5G029220 | lja | prot=eq;transcript=eq;scaffold=CM0200;name=chr5.CM0200.1620.nc | - | chr5 | No | |
| MD00G284140 | mdo | transcript=eq;prot=eq;pid=MDP0000241307;tid=MDP0000241307;contig=MDC012137.247 | - | MDC012137.247 | No | |
| MD13G001810 | mdo | transcript=eq;prot=eq;pid=MDP0000778113;tid=MDP0000778113;contig=MDC012137.246 | - | 13 | No | |
| MD16G000380 | mdo | transcript=eq;prot=eq;pid=MDP0000719154;tid=MDP0000719154;contig=MDC008103.128 | - | 16 | No | |
| ME01284G00050 | mes | PACid=17966166;RNAname=cassava4.1_025609m;GeneName=cassava4.1_025609m.g;transcript=eq;prot=eq | - | scaffold01284 | No | |
| ME04251G00180 | mes | PACid=17970369;RNAname=cassava4.1_004784m;GeneName=cassava4.1_004784m.g;transcript=eq;prot=eq | - | scaffold04251 | No | |
| OS01G03530 | osa | multicopper oxidase domain containing protein, expressed | transcript=eq;prot=eq; | + | 1 | No |
| OS01G03549 | osa | multi%2Dcopper oxidase type I family protein, putative, expressed | transcript=eq;prot=eq; | + | 1 | No |
| OS01G03620 | osa | multicopper oxidase domain containing protein, expressed | transcript=eq;prot=eq; | + | 1 | No |