Gene family  

Sub-families
ORTHO002360 (32 genes in 25 species)
ORTHO027975 (4 genes in 4 species)
View all sub-families (2)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (3 genes)
ath
Arabidopsis thaliana (2 genes)
bdi
Brachypodium distachyon (1 gene)
cpa
Carica papaya (2 genes)
cre
Chlamydomonas reinhardtii (1 gene)
fve
Fragaria vesca (3 genes)
gma
Glycine max (4 genes)
lja
Lotus japonicus (1 gene)
mdo
Malus domestica (5 genes)
mes
Manihot esculenta (3 genes)
mrcc299
Micromonas sp. RCC299 (1 gene)
mtr
Medicago truncatula (2 genes)
olu
Ostreococcus lucimarinus (1 gene)
osa
Oryza sativa ssp. japonica (2 genes)
osaindica
Oryza sativa ssp. indica (1 gene)
ota
Ostreococcus tauri (1 gene)
ppa
Physcomitrella patens (1 gene)
ptr
Populus trichocarpa (5 genes)
rco
Ricinus communis (2 genes)
sbi
Sorghum bicolor (1 gene)
smo
Selaginella moellendorffii (1 gene)
tca
Theobroma cacao (2 genes)
vca
Volvox carteri (1 gene)
vvi
Vitis vinifera (3 genes)
zma
Zea mays (1 gene)



The gene family HOM002530 has 50 genes in 25 species (1 outlier gene).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 3, showing 20 records out of 50 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL1G14550 aly name=fgenesh1_pm.C_scaffold_1001167;pid=312387;prot=eq;tid=312387 + scaffold_1 No
AL1G14570 aly name=fgenesh1_pg.C_scaffold_1001243;pid=334678;prot=eq;tid=334678 + scaffold_1 No
AL7G39280 aly name=scaffold_704143.1;pid=916401;prot=eq;tid=947914 - scaffold_7 No
AT1G13820 ath alpha/beta-Hydrolases superfamily protein; FUNCTIONS IN: hydrolase activity, catalytic activity; CONTAINS InterPro DOMAIN/s: Epoxide hydrolase-like (InterPro:IPR000639), Alpha/beta hydrolase fold-1 (InterPro:IPR000073); BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT5G39220.1); Has 7432 Blast hits to 7419 proteins in 1219 species: Archae - 99; Bacteria - 5035; Metazoa - 262; Fungi - 72; Plants - 574; Viruses - 0; Other Eukaryotes - 1390 (source: NCBI BLink).;alpha/beta-Hydrolases superfamily protein transcript=eq;prot=eq; + 1 No
AT5G39220 ath alpha/beta-Hydrolases superfamily protein; CONTAINS InterPro DOMAIN/s: Alpha/beta hydrolase fold-1 (InterPro:IPR000073); BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT1G13820.1); Has 3137 Blast hits to 3135 proteins in 734 species: Archae - 56; Bacteria - 2199; Metazoa - 167; Fungi - 8; Plants - 225; Viruses - 0; Other Eukaryotes - 482 (source: NCBI BLink).;alpha/beta-Hydrolases superfamily protein transcript=eq;prot=eq; + 5 No
BD1G22250 bdi pid=Bradi1g22250.1;tid=Bradi1g22250.1;GeneName=Bradi1g22250;transcript=eq;prot=eq + Bd1 No
CP00001G01190 cpa name=evm.TU.supercontig_1.119;pid=evm.TU.supercontig_1.119;prot=eq;transcript=eq - supercontig_1 No
CP00014G01710 cpa name=evm.TU.supercontig_14.171;pid=evm.TU.supercontig_14.171;prot=eq;transcript=eq - supercontig_14 No
CR03G01110 cre name=e_gwW.34.106.1;pid=119661;prot=eq;tid=119661;transcript=eq + chromosome_3 No
FV0G04210 fve hypothetical protein transcript=eq;prot=eq;pid=gene04616 + scf0513158 No
FV6G42620 fve Protein-glutamine gamma-glutamyltransferase K (TGase K) (similar to) transcript=eq;prot=eq;pid=gene04284 + LG6 No
FV6G42630 fve hypothetical protein transcript=eq;prot=eq;pid=gene04285 + LG6 No
GM01G07110 gma 01 pid=16243676;transcript=eq;prot=eq;name=Glyma01g07110.1 - Gm01 No
GM02G12960 gma 02 pid=16247905;transcript=eq;prot=eq;name=Glyma02g12960.1 - Gm02 No
GM07G35220 gma 07 pid=16268791;transcript=eq;prot=eq;name=Glyma07g35220.1 + Gm07 No
GM20G03090 gma 20 pid=16315342;transcript=eq;prot=eq;name=Glyma20g03090.1 + Gm20 No
LJ2G014920 lja partial;prot=eq;transcript=eq;scaffold=CM0120;name=chr2.CM0120.400.nc + chr2 No
MD00G031430 mdo transcript=eq;prot=eq;pid=MDP0000268300;tid=MDP0000268300;contig=MDC001326.607 - MDC001326.607 No
MD00G272590 mdo transcript=eq;prot=eq;pid=MDP0000241015;tid=MDP0000241015;contig=MDC011658.282 + MDC011658.282 No
MD00G317640 mdo transcript=eq;prot=eq;pid=MDP0000297681;tid=MDP0000297681;contig=MDC013450.240 + MDC013450.240 No
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