Gene family  

Sub-families
ORTHO003119 (30 genes in 24 species)
ORTHO024669 (5 genes in 1 species)
ORTHO032977 (3 genes in 2 species)
View all sub-families (5)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (1 gene)
ath
Arabidopsis thaliana (1 gene)
bdi
Brachypodium distachyon (1 gene)
cpa
Carica papaya (2 genes)
cre
Chlamydomonas reinhardtii (1 gene)
fve
Fragaria vesca (1 gene)
gma
Glycine max (4 genes)
mdo
Malus domestica (13 genes)
mes
Manihot esculenta (1 gene)
mrcc299
Micromonas sp. RCC299 (1 gene)
mtr
Medicago truncatula (2 genes)
olu
Ostreococcus lucimarinus (1 gene)
osa
Oryza sativa ssp. japonica (1 gene)
osaindica
Oryza sativa ssp. indica (1 gene)
ota
Ostreococcus tauri (1 gene)
ppa
Physcomitrella patens (1 gene)
ptr
Populus trichocarpa (2 genes)
rco
Ricinus communis (1 gene)
sbi
Sorghum bicolor (2 genes)
smo
Selaginella moellendorffii (1 gene)
tca
Theobroma cacao (7 genes)
vca
Volvox carteri (1 gene)
vvi
Vitis vinifera (3 genes)
zma
Zea mays (1 gene)



The gene family HOM002506 has 51 genes in 24 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 3, showing 20 records out of 51 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL5G27350 aly name=fgenesh2_kg.5__2135__AT3G57000.1;pid=486143;prot=eq;tid=486143 + scaffold_5 No
AT3G57000 ath nucleolar essential protein-related; CONTAINS InterPro DOMAIN/s: Ribosomal biogenesis, methyltransferase, EMG1/NEP1 (InterPro:IPR005304); Has 1079 Blast hits to 938 proteins in 280 species: Archae - 143; Bacteria - 12; Metazoa - 353; Fungi - 181; Plants - 69; Viruses - 2; Other Eukaryotes - 319 (source: NCBI BLink).;nucleolar essential protein-related transcript=eq;prot=eq; + 3 No
BD3G10610 bdi pid=Bradi3g10610.1;tid=Bradi3g10610.1;GeneName=Bradi3g10610;transcript=eq;prot=eq + Bd3 No
CP00005G01770 cpa name=evm.TU.supercontig_5.177;pid=evm.TU.supercontig_5.177;prot=eq;transcript=eq + supercontig_5 No
CP01212G00020 cpa name=evm.TU.supercontig_1212.2;pid=evm.TU.supercontig_1212.2;prot=eq;transcript=eq + supercontig_1212 No
CR01G02060 cre name=fgenesh2_pg.C_scaffold_52000008;pid=178371;prot=eq;tid=178371;transcript=eq - chromosome_1 No
FV7G16510 fve Probable ribosome biogenesis protein NEP1 (similar to) transcript=eq;prot=eq;pid=gene14273 - LG7 No
GM09G21290 gma 09 pid=16275957;transcript=eq;prot=eq;name=Glyma09g21290.1 - Gm09 No
GM11G10520 gma 11 pid=16283378;transcript=eq;prot=eq;name=Glyma11g10520.1 + Gm11 No
GM12G02820 gma 12 pid=16286161;transcript=eq;prot=eq;name=Glyma12g02820.1 + Gm12 No
GM17G05100 gma 17 pid=16304463;transcript=eq;prot=eq;name=Glyma17g05100.1 + Gm17 No
MD00G282380 mdo transcript=eq;prot=eq;pid=MDP0000151529;tid=MDP0000151529;contig=MDC012067.379 - MDC012067.379 No
MD00G282390 mdo transcript=eq;prot=eq;pid=MDP0000259957;tid=MDP0000259957;contig=MDC012067.379 - MDC012067.379 No
MD00G282410 mdo transcript=eq;prot=eq;pid=MDP0000299107;tid=MDP0000299107;contig=MDC012067.388 + MDC012067.388 No
MD00G282420 mdo transcript=eq;prot=eq;pid=MDP0000299108;tid=MDP0000299108;contig=MDC012067.388 + MDC012067.388 No
MD00G302990 mdo transcript=eq;prot=eq;pid=MDP0000241738;tid=MDP0000241738;contig=MDC012872.184 + MDC012872.184 No
MD00G483100 mdo transcript=eq;prot=eq;pid=MDP0000144441;tid=MDP0000144441;contig=MDC022590.142 - MDC022590.142 No
MD00G496090 mdo transcript=eq;prot=eq;pid=MDP0000423601;tid=MDP0000423601;contig=MDC025179.57 - MDC025179.57 No
MD00G505870 mdo transcript=eq;prot=eq;pid=MDP0000229430;tid=MDP0000229430;contig=MDC029175.5 + MDC029175.5 No
MD00G510690 mdo transcript=eq;prot=eq;pid=MDP0000227147;tid=MDP0000227147;contig=MDC033984.5 + MDC033984.5 No
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