Gene family  

Sub-families
ORTHO007351 (23 genes in 19 species)
ORTHO011972 (16 genes in 16 species)
ORTHO046366 (2 genes in 2 species)
View all sub-families (3)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (3 genes)
ath
Arabidopsis thaliana (3 genes)
bdi
Brachypodium distachyon (2 genes)
cpa
Carica papaya (2 genes)
fve
Fragaria vesca (1 gene)
gma
Glycine max (6 genes)
lja
Lotus japonicus (2 genes)
mdo
Malus domestica (4 genes)
mes
Manihot esculenta (3 genes)
mtr
Medicago truncatula (1 gene)
osa
Oryza sativa ssp. japonica (2 genes)
osaindica
Oryza sativa ssp. indica (2 genes)
ppa
Physcomitrella patens (4 genes)
ptr
Populus trichocarpa (3 genes)
rco
Ricinus communis (2 genes)
sbi
Sorghum bicolor (2 genes)
smo
Selaginella moellendorffii (1 gene)
tca
Theobroma cacao (3 genes)
vvi
Vitis vinifera (2 genes)
zma
Zea mays (3 genes)



The gene family HOM002487 has 51 genes in 20 species (4 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 3, showing 20 records out of 51 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL5G04110 aly name=scaffold_500438.1;pid=904734;prot=eq;tid=936247 + scaffold_5 No
AL6G23700 aly name=fgenesh2_kg.6__2384__AT5G23890.1;pid=489250;prot=eq;tid=489250 + scaffold_6 No
AL8G16770 aly name=fgenesh1_pg.C_scaffold_8001270;pid=357483;prot=eq;tid=357483 + scaffold_8 No
AT3G25680 ath FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: S-layer homology domain (InterPro:IPR001119); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G23890.1); Has 2454 Blast hits to 2065 proteins in 355 species: Archae - 39; Bacteria - 284; Metazoa - 1081; Fungi - 166; Plants - 264; Viruses - 45; Other Eukaryotes - 575 (source: NCBI BLink). transcript=eq;prot=eq; + 3 No
AT5G23890 ath LOCATED IN: mitochondrion, chloroplast thylakoid membrane, chloroplast, plastid, chloroplast envelope; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: S-layer homology domain (InterPro:IPR001119); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G52410.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). transcript=eq;prot=eq; + 5 No
AT5G52410 ath INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: S-layer homology domain (InterPro:IPR001119); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G23890.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). transcript=eq;prot=eq; + 5 No
BD1G00480 bdi actin-dependent ATPase activity (Blast2GO) pid=Bradi1g00480.2;tid=Bradi1g00480.2;GeneName=Bradi1g00480;transcript=eq;prot=eq - Bd1 No
BD1G42520 bdi motor activity, ATPase activity (Blast2GO) pid=Bradi1g42520.1;tid=Bradi1g42520.1;GeneName=Bradi1g42520;transcript=eq;prot=eq + Bd1 No
CP00107G00650 cpa name=evm.TU.supercontig_107.65;pid=evm.TU.supercontig_107.65;prot=eq;transcript=eq + supercontig_107 No
CP29023G00020 cpa name=evm.TU.contig_29023.2;pid=evm.TU.contig_29023.2;prot=eq;transcript=eq - contig_29023 No
FV7G38320 fve Cytochrome P450 89A2 (similar to) transcript=eq;prot=eq;pid=gene13246 - LG7 No
GM01G22630 gma 01 pid=16244250;transcript=eq;prot=eq;name=Glyma01g22630.1 - Gm01 No
GM02G11270 gma 02 pid=16247714;transcript=eq;prot=eq;name=Glyma02g11270.1 - Gm02 No
GM09G25200 gma 09 pid=16276205;transcript=eq;prot=eq;name=Glyma09g25200.1 - Gm09 No
GM10G37850 gma 10 pid=16281337;transcript=eq;prot=eq;name=Glyma10g37850.1 - Gm10 No
GM16G30160 gma 16 pid=16303381;transcript=eq;prot=eq;name=Glyma16g30160.1 - Gm16 No
GM20G29970 gma 20 pid=16317321;transcript=eq;prot=eq;name=Glyma20g29970.1 + Gm20 No
LJ2G004300 lja prot=eq;transcript=eq;scaffold=LjT39I14;name=chr2.LjT39I14.100.nc - chr2 No
LJ2G013430 lja partial;prot=eq;transcript=eq;scaffold=CM0749;name=chr2.CM0749.260.nd + chr2 No
MD00G518760 mdo transcript=eq;prot=eq;pid=MDP0000230104;tid=MDP0000230104;contig=MDC043902.18 + MDC043902.18 Yes
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