Gene family  

Sub-families
ORTHO005914 (25 genes in 22 species)
ORTHO009236 (20 genes in 19 species)
ORTHO077383 (2 genes in 1 species)
View all sub-families (3)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (2 genes)
ath
Arabidopsis thaliana (2 genes)
bdi
Brachypodium distachyon (2 genes)
cpa
Carica papaya (2 genes)
cre
Chlamydomonas reinhardtii (1 gene)
fve
Fragaria vesca (2 genes)
gma
Glycine max (3 genes)
lja
Lotus japonicus (2 genes)
mdo
Malus domestica (4 genes)
mes
Manihot esculenta (2 genes)
mrcc299
Micromonas sp. RCC299 (1 gene)
mtr
Medicago truncatula (2 genes)
olu
Ostreococcus lucimarinus (1 gene)
osa
Oryza sativa ssp. japonica (2 genes)
osaindica
Oryza sativa ssp. indica (4 genes)
ota
Ostreococcus tauri (1 gene)
ppa
Physcomitrella patens (1 gene)
ptr
Populus trichocarpa (3 genes)
rco
Ricinus communis (2 genes)
sbi
Sorghum bicolor (1 gene)
smo
Selaginella moellendorffii (1 gene)
tca
Theobroma cacao (3 genes)
vca
Volvox carteri (1 gene)
vvi
Vitis vinifera (3 genes)
zma
Zea mays (4 genes)



The gene family HOM002473 has 52 genes in 25 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 3, showing 20 records out of 52 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL2G19420 aly name=fgenesh2_kg.2__1343__AT1G70820.1;pid=476213;prot=eq;tid=476213 + scaffold_2 No
AL6G17420 aly name=scaffold_601807.1;pid=909750;prot=eq;tid=941263 + scaffold_6 No
AT1G70820 ath phosphoglucomutase, putative / glucose phosphomutase, putative; FUNCTIONS IN: intramolecular transferase activity, phosphotransferases; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Alpha-D-phosphohexomutase, alpha/beta/alpha domain III (InterPro:IPR005846), Alpha-D-phosphohexomutase, alpha/beta/alpha domain II (InterPro:IPR005845), Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III (InterPro:IPR016055), Alpha-D-phosphohexomutase (InterPro:IPR005841), Alpha-D-phosphohexomutase, alpha/beta/alpha domain I (InterPro:IPR005844); BEST Arabidopsis thaliana protein match is: phosphoglucosamine mutase family protein (TAIR:AT5G17530.2); Has 16953 Blast hits to 16952 proteins in 2734 species: Archae - 435; Bacteria - 11347; Metazoa - 78; Fungi - 46; Plants - 64; Viruses - 0; Other Eukaryotes - 4983 (source: NCBI BLink).;phosphoglucomutase, putative / glucose phosphomutase, putative transcript=eq;prot=eq; + 1 No
AT5G17530 ath phosphoglucosamine mutase family protein; FUNCTIONS IN: intramolecular transferase activity, phosphotransferases; INVOLVED IN: carbohydrate metabolic process; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Alpha-D-phosphohexomutase, alpha/beta/alpha domain III (InterPro:IPR005846), Alpha-D-phosphohexomutase, alpha/beta/alpha domain II (InterPro:IPR005845), Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III (InterPro:IPR016055), Alpha-D-phosphohexomutase (InterPro:IPR005841), Alpha-D-phosphohexomutase, alpha/beta/alpha domain I (InterPro:IPR005844); BEST Arabidopsis thaliana protein match is: phosphoglucomutase, putative / glucose phosphomutase, putative (TAIR:AT1G70820.1).;phosphoglucosamine mutase family protein transcript=eq;prot=eq; + 5 No
BD1G28790 bdi cysteine-type endopeptidase activity (Blast2GO) pid=Bradi1g28790.1;tid=Bradi1g28790.1;GeneName=Bradi1g28790;transcript=eq;prot=eq - Bd1 No
BD1G41957 bdi pid=Bradi1g41957.1;tid=Bradi1g41957.1;GeneName=Bradi1g41957;transcript=eq;prot=eq - Bd1 No
CP00002G02290 cpa name=evm.TU.supercontig_2.229;pid=evm.TU.supercontig_2.229;prot=eq;transcript=eq + supercontig_2 No
CP00053G00840 cpa name=evm.TU.supercontig_53.84;pid=evm.TU.supercontig_53.84;prot=eq;transcript=eq - supercontig_53 No
CR01G11870 cre name=pasa_Sanger_mRNA2935;pid=405437;prot=eq;tid=393139;transcript=eq - chromosome_1 No
FV0G06990 fve Phosphomannomutase/phosphoglucomutase (PMM / PGM) (probable) transcript=eq;prot=eq;pid=gene04101 - scf0513158 No
FV7G23770 fve Phosphomannomutase/phosphoglucomutase (PMM / PGM) (probable) transcript=eq;prot=eq;pid=gene23284 + LG7 No
GM10G35490 gma 10 pid=16281053;transcript=eq;prot=eq;name=Glyma10g35490.1 + Gm10 No
GM20G02220 gma 20 pid=16315237;transcript=eq;prot=eq;name=Glyma20g02220.1 - Gm20 No
GM20G32030 gma 20 pid=16317569;transcript=eq;prot=eq;name=Glyma20g32030.1 - Gm20 No
LJ0G028510 lja partial;prot=eq;transcript=eq;scaffold=LjSGA_013762;name=LjSGA_013762.1 + LjSGA_013762 No
LJ0G223980 lja partial;prot=eq;transcript=eq;scaffold=LjSGA_072898;name=LjSGA_072898.1 - LjSGA_072898 No
MD00G307610 mdo transcript=eq;prot=eq;pid=MDP0000202233;tid=MDP0000202233;contig=MDC013067.128 + MDC013067.128 No
MD00G421950 mdo transcript=eq;prot=eq;pid=MDP0000889498;tid=MDP0000889498;contig=MDC019262.202 - MDC019262.202 No
MD01G008870 mdo transcript=eq;prot=eq;pid=MDP0000230233;tid=MDP0000230233;contig=MDC013531.194 + 1 No
MD08G005320 mdo transcript=eq;prot=eq;pid=MDP0000197787;tid=MDP0000197787;contig=MDC013531.187 + 8 No
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