Gene family  

Sub-families
ORTHO012395 (15 genes in 11 species)
ORTHO014340 (12 genes in 9 species)
ORTHO018011 (7 genes in 5 species)
View all sub-families (9)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (4 genes)
ath
Arabidopsis thaliana (4 genes)
cpa
Carica papaya (3 genes)
fve
Fragaria vesca (3 genes)
gma
Glycine max (10 genes)
lja
Lotus japonicus (1 gene)
mdo
Malus domestica (5 genes)
mes
Manihot esculenta (6 genes)
mtr
Medicago truncatula (2 genes)
ptr
Populus trichocarpa (7 genes)
rco
Ricinus communis (3 genes)
tca
Theobroma cacao (3 genes)
vvi
Vitis vinifera (1 gene)



The gene family HOM002449 has 52 genes in 13 species (1 outlier gene).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 3, showing 20 records out of 52 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL1G25520 aly name=fgenesh2_kg.1__2587__AT1G23710.1;pid=472633;prot=eq;tid=472633 + scaffold_1 No
AL2G18930 aly name=fgenesh2_kg.2__1292__AT1G70420.1;pid=476162;prot=eq;tid=476162 - scaffold_2 No
AL5G07050 aly name=fgenesh2_kg.5__570__AT3G27880.1;pid=484578;prot=eq;tid=484578 + scaffold_5 No
AL8G29240 aly name=fgenesh2_kg.8__2276__AT5G62770.1;pid=496460;prot=eq;tid=496460 + scaffold_8 No
AT1G23710 ath Protein of unknown function (DUF1645); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1645 (InterPro:IPR012442); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1645) (TAIR:AT1G70420.1); Has 288 Blast hits to 282 proteins in 52 species: Archae - 0; Bacteria - 6; Metazoa - 16; Fungi - 11; Plants - 191; Viruses - 0; Other Eukaryotes - 64 (source: NCBI BLink).;Protein of unknown function (DUF1645) transcript=eq;prot=eq; + 1 No
AT1G70420 ath Protein of unknown function (DUF1645); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1645 (InterPro:IPR012442); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1645) (TAIR:AT1G23710.1); Has 179 Blast hits to 179 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 9; Fungi - 0; Plants - 162; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).;Protein of unknown function (DUF1645) transcript=eq;prot=eq; - 1 No
AT3G27880 ath Protein of unknown function (DUF1645); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1645 (InterPro:IPR012442); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1645) (TAIR:AT1G23710.1); Has 180 Blast hits to 180 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 176; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).;Protein of unknown function (DUF1645) transcript=eq;prot=eq; + 3 No
AT5G62770 ath Protein of unknown function (DUF1645); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1645 (InterPro:IPR012442); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1645) (TAIR:AT1G70420.1); Has 173 Blast hits to 173 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 2; Plants - 161; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).;Protein of unknown function (DUF1645) transcript=eq;prot=eq; + 5 No
CP00069G00450 cpa name=evm.TU.supercontig_69.45;pid=evm.TU.supercontig_69.45;prot=eq;transcript=eq + supercontig_69 No
CP00076G00610 cpa name=evm.TU.supercontig_76.61;pid=evm.TU.supercontig_76.61;prot=eq;transcript=eq + supercontig_76 No
CP00215G00110 cpa name=evm.TU.supercontig_215.11;pid=evm.TU.supercontig_215.11;prot=eq;transcript=eq - supercontig_215 No
FV0G38890 fve Protein lunapark homolog (probable) transcript=eq;prot=eq;pid=gene28421 - scf0513124 No
FV4G21650 fve Cyclin-dependent kinase inhibitor 2A, isoform 4 (probable) transcript=eq;prot=eq;pid=gene00637 + LG4 No
FV5G06180 fve hypothetical protein transcript=eq;prot=eq;pid=gene32185 - LG5 No
GM01G03700 gma 01 pid=16243301;transcript=eq;prot=eq;name=Glyma01g03700.1 + Gm01 No
GM02G04000 gma 02 pid=16246905;transcript=eq;prot=eq;name=Glyma02g04000.1 - Gm02 No
GM04G35580 gma 04 pid=16256850;transcript=eq;prot=eq;name=Glyma04g35580.1 + Gm04 No
GM05G02200 gma 05 pid=16258039;transcript=eq;prot=eq;name=Glyma05g02200.1 - Gm05 No
GM05G08610 gma 05 pid=16258691;transcript=eq;prot=eq;name=Glyma05g08610.1 - Gm05 No
GM06G19380 gma 06 pid=16263498;transcript=eq;prot=eq;name=Glyma06g19380.1 + Gm06 No
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