Gene family  

Sub-families
ORTHO001607 (37 genes in 22 species)
ORTHO035685 (3 genes in 1 species)
ORTHO057130 (2 genes in 1 species)
View all sub-families (4)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (2 genes)
ath
Arabidopsis thaliana (2 genes)
bdi
Brachypodium distachyon (2 genes)
cpa
Carica papaya (1 gene)
cre
Chlamydomonas reinhardtii (1 gene)
fve
Fragaria vesca (1 gene)
gma
Glycine max (3 genes)
mdo
Malus domestica (10 genes)
mes
Manihot esculenta (3 genes)
mrcc299
Micromonas sp. RCC299 (1 gene)
olu
Ostreococcus lucimarinus (1 gene)
osa
Oryza sativa ssp. japonica (2 genes)
osaindica
Oryza sativa ssp. indica (3 genes)
ota
Ostreococcus tauri (1 gene)
ppa
Physcomitrella patens (3 genes)
ptr
Populus trichocarpa (4 genes)
rco
Ricinus communis (2 genes)
sbi
Sorghum bicolor (2 genes)
smo
Selaginella moellendorffii (1 gene)
tca
Theobroma cacao (2 genes)
vca
Volvox carteri (1 gene)
vvi
Vitis vinifera (2 genes)
zma
Zea mays (3 genes)



The gene family HOM002415 has 53 genes in 23 species (1 outlier gene).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 3, showing 20 records out of 53 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL7G14190 aly name=scaffold_701500.1;pid=913758;prot=eq;tid=945271 - scaffold_7 No
AL8G18200 aly name=fgenesh1_pm.C_scaffold_8001052;pid=331709;prot=eq;tid=331709 - scaffold_8 No
AT4G27690 ath vacuolar protein sorting 26B (VPS26B); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: intracellular protein transport, vacuolar transport, retrograde transport, endosome to Golgi; LOCATED IN: retromer complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Vacuolar protein sorting-associated protein 26 (InterPro:IPR005377); BEST Arabidopsis thaliana protein match is: vacuolar protein sorting 26A (TAIR:AT5G53530.1); Has 795 Blast hits to 794 proteins in 227 species: Archae - 0; Bacteria - 0; Metazoa - 406; Fungi - 146; Plants - 106; Viruses - 0; Other Eukaryotes - 137 (source: NCBI BLink).;vacuolar protein sorting 26B transcript=eq;prot=eq; + 4 No
AT5G53530 ath Homolog of yeast retromer subunit VPS26. Part of a retromer-like protein complex involved in endosome to lysosome protein transport.;vacuolar protein sorting 26A transcript=eq;prot=eq; - 5 No
BD4G06910 bdi pid=Bradi4g06910.1;tid=Bradi4g06910.1;GeneName=Bradi4g06910;transcript=eq;prot=eq - Bd4 No
BD4G12930 bdi pid=Bradi4g12930.3;tid=Bradi4g12930.3;GeneName=Bradi4g12930;transcript=eq;prot=eq - Bd4 No
CP00003G01280 cpa name=evm.TU.supercontig_3.128;pid=evm.TU.supercontig_3.128;prot=eq;transcript=eq - supercontig_3 No
CR09G05860 cre name=acegs_kg.scaffold_30000042;pid=158645;prot=eq;tid=158645;transcript=eq - chromosome_9 No
FV7G35510 fve Vacuolar protein sorting-associated protein 26 (putative) transcript=eq;prot=eq;pid=gene12788 + LG7 No
GM04G15160 gma 04 pid=16255951;transcript=eq;prot=eq;name=Glyma04g15160.1 - Gm04 No
GM06G46990 gma 06 pid=16265436;transcript=eq;prot=eq;name=Glyma06g46990.1 + Gm06 No
GM13G03920 gma 13 pid=16289574;transcript=eq;prot=eq;name=Glyma13g03920.1 + Gm13 No
MD00G119250 mdo transcript=eq;prot=eq;pid=MDP0000148821;tid=MDP0000148821;contig=MDC005082.182 + MDC005082.182 Yes
MD00G151790 mdo transcript=eq;prot=eq;pid=MDP0000137488;tid=MDP0000137488;contig=MDC006529.159 + MDC006529.159 No
MD00G176110 mdo transcript=eq;prot=eq;pid=MDP0000136515;tid=MDP0000136515;contig=MDC007544.320 - MDC007544.320 No
MD00G256880 mdo transcript=eq;prot=eq;pid=MDP0000184702;tid=MDP0000184702;contig=MDC011022.320 - MDC011022.320 No
MD00G322480 mdo transcript=eq;prot=eq;pid=MDP0000252263;tid=MDP0000252263;contig=MDC013673.83 + MDC013673.83 No
MD01G022330 mdo transcript=eq;prot=eq;pid=MDP0000857913;tid=MDP0000857913;contig=MDC018836.211 - 1 No
MD01G022340 mdo transcript=eq;prot=eq;pid=MDP0000366110;tid=MDP0000366110;contig=MDC022149.74 - 1 No
MD07G011350 mdo transcript=eq;prot=eq;pid=MDP0000547615;tid=MDP0000547615;contig=MDC003830.211 + 7 No
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