Gene family  

Sub-families
No subfamilies present
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (3 genes)
ath
Arabidopsis thaliana (3 genes)
bdi
Brachypodium distachyon (1 gene)
cpa
Carica papaya (2 genes)
cre
Chlamydomonas reinhardtii (1 gene)
fve
Fragaria vesca (2 genes)
gma
Glycine max (4 genes)
lja
Lotus japonicus (4 genes)
mdo
Malus domestica (6 genes)
mes
Manihot esculenta (3 genes)
mrcc299
Micromonas sp. RCC299 (1 gene)
mtr
Medicago truncatula (2 genes)
olu
Ostreococcus lucimarinus (1 gene)
osa
Oryza sativa ssp. japonica (2 genes)
osaindica
Oryza sativa ssp. indica (1 gene)
ota
Ostreococcus tauri (1 gene)
ppa
Physcomitrella patens (2 genes)
ptr
Populus trichocarpa (4 genes)
rco
Ricinus communis (2 genes)
sbi
Sorghum bicolor (1 gene)
tca
Theobroma cacao (2 genes)
vca
Volvox carteri (1 gene)
vvi
Vitis vinifera (2 genes)
zma
Zea mays (2 genes)



The gene family HOM002394 has 53 genes in 24 species (1 outlier gene).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
This page uses the Flash plugin.




Index of genes with 1 constraints:

Page 1 of 3, showing 20 records out of 53 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL2G24780 aly name=scaffold_202534.1;pid=895460;prot=eq;tid=926973 - scaffold_2 No
AL3G38600 aly name=fgenesh2_kg.3__3378__AT2G17790.1;pid=480677;prot=eq;tid=480677 + scaffold_3 No
AL5G20940 aly name=fgenesh2_kg.5__1474__AT3G51310.1;pid=485482;prot=eq;tid=485482 - scaffold_5 No
AT1G75850 ath VPS35 homolog B (VPS35B); CONTAINS InterPro DOMAIN/s: Vacuolar protein sorting-associated protein 35 (InterPro:IPR005378); BEST Arabidopsis thaliana protein match is: VPS35 homolog A (TAIR:AT2G17790.1); Has 618 Blast hits to 508 proteins in 209 species: Archae - 0; Bacteria - 1; Metazoa - 191; Fungi - 219; Plants - 72; Viruses - 0; Other Eukaryotes - 135 (source: NCBI BLink).;VPS35 homolog B transcript=eq;prot=eq; - 1 No
AT2G17790 ath Encodes a protein with similarity to yeast VPS35 which encodes a component of the retromer involved in retrograde endosomal transport. Mutants partially suppress the loss of VTI11 function in Arabidopsis and restores gravitropism in the double mutant.;VPS35 homolog A transcript=eq;prot=eq; + 2 No
AT3G51310 ath Homolog of yeast retromer subunit VPS35. Part of a retromer-like protein complex involved in endosome to lysosome protein transport.;VPS35 homolog C transcript=eq;prot=eq; - 3 No
BD1G05122 bdi pid=Bradi1g05122.1;tid=Bradi1g05122.1;GeneName=Bradi1g05122;transcript=eq;prot=eq - Bd1 No
CP00006G02830 cpa name=evm.TU.supercontig_6.284;pid=evm.TU.supercontig_6.284;prot=eq;transcript=eq - supercontig_6 No
CP00026G03030 cpa name=evm.TU.supercontig_26.303;pid=evm.TU.supercontig_26.303;prot=eq;transcript=eq + supercontig_26 No
CR01G06150 cre name=SAN_chlre3.1.81.1.5;pid=195541;prot=eq;tid=195541;transcript=eq - chromosome_1 No
FV1G13260 fve Vacuolar protein sorting-associated protein 35 (probable) transcript=eq;prot=eq;pid=gene14570 + LG1 No
FV2G38230 fve Vacuolar protein sorting-associated protein 35 (probable) transcript=eq;prot=eq;pid=gene08554 + LG2 No
GM01G36870 gma 01 pid=16245415;transcript=eq;prot=eq;name=Glyma01g36870.1 + Gm01 No
GM11G08390 gma 11 pid=16283122;transcript=eq;prot=eq;name=Glyma11g08390.1 - Gm11 No
GM14G40270 gma 14 pid=16297035;transcript=eq;prot=eq;name=Glyma14g40270.1 + Gm14 No
GM17G37870 gma 17 pid=16307389;transcript=eq;prot=eq;name=Glyma17g37870.1 - Gm17 No
LJ0G407290 lja partial;prot=eq;transcript=eq;scaffold=CM1324;name=CM1324.30.nd - chr0 No
LJ0G407330 lja partial;prot=eq;transcript=eq;scaffold=CM1324;name=CM1324.70.nd - chr0 No
LJ0G407370 lja prot=eq;transcript=eq;scaffold=CM1324;name=CM1324.110.nd - chr0 No
LJ2G022400 lja prot=eq;transcript=eq;scaffold=CM0695;name=chr2.CM0695.240.nc + chr2 No
<< previous
1 | 2 | 3 next >>

Download genes

Include following columns
gene_id
species
description
comment
strand
chr
outlier