Gene family  

Sub-families
ORTHO006334 (24 genes in 20 species)
ORTHO020419 (6 genes in 2 species)
ORTHO037691 (3 genes in 1 species)
View all sub-families (5)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (2 genes)
ath
Arabidopsis thaliana (2 genes)
bdi
Brachypodium distachyon (3 genes)
cpa
Carica papaya (1 gene)
cre
Chlamydomonas reinhardtii (1 gene)
gma
Glycine max (2 genes)
lja
Lotus japonicus (9 genes)
mes
Manihot esculenta (2 genes)
mrcc299
Micromonas sp. RCC299 (1 gene)
mtr
Medicago truncatula (11 genes)
osa
Oryza sativa ssp. japonica (6 genes)
ota
Ostreococcus tauri (1 gene)
ppa
Physcomitrella patens (1 gene)
ptr
Populus trichocarpa (1 gene)
rco
Ricinus communis (2 genes)
sbi
Sorghum bicolor (1 gene)
smo
Selaginella moellendorffii (1 gene)
tca
Theobroma cacao (2 genes)
vca
Volvox carteri (2 genes)
vvi
Vitis vinifera (3 genes)



The gene family HOM002384 has 54 genes in 20 species (1 outlier gene).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 3, showing 20 records out of 54 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL2G10170 aly name=Al_scaffold_0002_960;pid=876366;prot=eq;tid=907879 + scaffold_2 No
AL2G10680 aly name=scaffold_201096.1;pid=894022;prot=eq;tid=925535 - scaffold_2 No
AT2G12905 ath unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). transcript=eq;prot=eq; + 2 Yes
ATCG00360 ath Encodes a protein required for photosystem I assembly and stability. In Chlamydomonas reinhardtii, this protein seems to act as a PSI specific chaperone facilitating the assembly of the complex by interacting with PsaA and PsaD. A loss of function mutation in tobacco leads to a loss of photosystem I.;Tetratricopeptide repeat (TPR)-like superfamily protein transcript=eq;prot=eq; - chloroplast No
BD2G13106 bdi pid=Bradi2g13106.1;tid=Bradi2g13106.1;GeneName=Bradi2g13106;transcript=eq;prot=eq + Bd2 No
BD5G23846 bdi pid=Bradi5g23846.1;tid=Bradi5g23846.1;GeneName=Bradi5g23846;transcript=eq;prot=eq - Bd5 No
BDCG00350 bdi ycf3;Ycf3;protein_id=ACF08641.1; transl_table=11; - chloroplast No
CPCG00370 cpa ycf3;photosystem I assembly protein ycf3;protein_id=ABY86783.1; transl_table=11; - chloroplast No
CRCG00570 cre ycf3;photosystem I assembly protein ycf3;protein_id=DAA00938.1; transl_table=11; - chloroplast No
GM09G30970 gma 09 pid=16276785;transcript=eq;prot=eq;name=Glyma09g30970.1 - Gm09 No
GMCG00190 gma ycf3;photosystem I assembly protein ycf3;protein_id=ABC25114.1; transl_table=11; + chloroplast No
LJ0G164170 lja partial;prot=eq;transcript=eq;scaffold=LjSGA_051576;name=LjSGA_051576.1 + LjSGA_051576 No
LJ0G172900 lja partial;prot=eq;transcript=eq;scaffold=LjSGA_054477;name=LjSGA_054477.1 + LjSGA_054477 No
LJ0G194600 lja partial;prot=eq;transcript=eq;scaffold=LjSGA_062025;name=LjSGA_062025.1.1 + LjSGA_062025 No
LJ0G204510 lja partial;prot=eq;transcript=eq;scaffold=LjSGA_065615;name=LjSGA_065615.1 + LjSGA_065615 No
LJ0G205070 lja partial;prot=eq;transcript=eq;scaffold=LjSGA_065815;name=LjSGA_065815.1 - LjSGA_065815 No
LJ0G207250 lja partial;prot=eq;transcript=eq;scaffold=LjSGA_066562;name=LjSGA_066562.0.1 - LjSGA_066562 No
LJ0G323910 lja partial;prot=eq;transcript=eq;scaffold=LjSGA_113977;name=LjSGA_113977.1 - LjSGA_113977 No
LJ0G327830 lja partial;prot=eq;transcript=eq;scaffold=LjSGA_115709;name=LjSGA_115709.1.2 + LjSGA_115709 No
LJCG00180 lja ycf3;hypothetical protein;protein_id=BAB33185.1; transl_table=11; + chloroplast No
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