Gene family  

Sub-families
ORTHO007230 (23 genes in 16 species)
ORTHO009308 (20 genes in 11 species)
ORTHO043320 (2 genes in 2 species)
View all sub-families (4)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (4 genes)
ath
Arabidopsis thaliana (4 genes)
bdi
Brachypodium distachyon (1 gene)
cpa
Carica papaya (2 genes)
fve
Fragaria vesca (2 genes)
gma
Glycine max (9 genes)
lja
Lotus japonicus (2 genes)
mdo
Malus domestica (7 genes)
mes
Manihot esculenta (2 genes)
mtr
Medicago truncatula (3 genes)
osa
Oryza sativa ssp. japonica (2 genes)
osaindica
Oryza sativa ssp. indica (2 genes)
ptr
Populus trichocarpa (5 genes)
rco
Ricinus communis (1 gene)
sbi
Sorghum bicolor (1 gene)
tca
Theobroma cacao (3 genes)
vvi
Vitis vinifera (1 gene)
zma
Zea mays (3 genes)



The gene family HOM002377 has 54 genes in 18 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 3, showing 20 records out of 54 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL3G22540 aly name=fgenesh2_kg.3__2286__AT3G20590.1;pid=479585;prot=eq;tid=479585 + scaffold_3 No
AL3G22550 aly name=scaffold_302458.1;pid=898488;prot=eq;tid=930001 + scaffold_3 No
AL3G22560 aly name=fgenesh2_kg.3__2288__AT3G20610.1;pid=479587;prot=eq;tid=479587 + scaffold_3 No
AL4G31400 aly name=scaffold_403282.1;pid=903781;prot=eq;tid=935294 - scaffold_4 No
AT2G43780 ath unknown protein; Has 30 Blast hits to 30 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 30; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). transcript=eq;prot=eq; - 2 No
AT3G20590 ath Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family; CONTAINS InterPro DOMAIN/s: Late embryogenesis abundant protein, group 2 (InterPro:IPR004864); BEST Arabidopsis thaliana protein match is: Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (TAIR:AT3G20600.1); Has 472 Blast hits to 472 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 472; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).;Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family transcript=eq;prot=eq; + 3 No
AT3G20600 ath Required for non-race specific resistance to bacterial and fungal pathogens.Mediates systemic acquired resistance (SAR) response.;Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family transcript=eq;prot=eq; + 3 No
AT3G20610 ath non-race specific disease resistance protein, putative; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (TAIR:AT3G20600.1); Has 124 Blast hits to 124 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 124; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).;non-race specific disease resistance protein, putative transcript=eq;prot=eq; + 3 No
BD2G39870 bdi pid=Bradi2g39870.1;tid=Bradi2g39870.1;GeneName=Bradi2g39870;transcript=eq;prot=eq + Bd2 No
CP00009G03660 cpa name=evm.TU.supercontig_9.366;pid=evm.TU.supercontig_9.366;prot=eq;transcript=eq - supercontig_9 No
CP26548G00030 cpa name=evm.TU.contig_26548.3;pid=evm.TU.contig_26548.3;prot=eq;transcript=eq + contig_26548 No
FV3G23900 fve Anti-adapter protein iraM (probable) transcript=eq;prot=eq;pid=gene03179 - LG3 No
FV6G28140 fve DNA polymerase (probable) transcript=eq;prot=eq;pid=gene18033 + LG6 No
GM06G42020 gma 06 pid=16264900;transcript=eq;prot=eq;name=Glyma06g42020.1 + Gm06 No
GM08G47980 gma 08 pid=16274225;transcript=eq;prot=eq;name=Glyma08g47980.1 + Gm08 No
GM10G26250 gma 10 pid=16280013;transcript=eq;prot=eq;name=Glyma10g26250.1 + Gm10 No
GM12G34210 gma 12 pid=16288841;transcript=eq;prot=eq;name=Glyma12g34210.1 + Gm12 No
GM13G36340 gma 13 pid=16292814;transcript=eq;prot=eq;name=Glyma13g36340.1 - Gm13 No
GM17G30890 gma 17 pid=16306658;transcript=eq;prot=eq;name=Glyma17g30890.1 + Gm17 No
GM18G28860 gma 18 pid=16309388;transcript=eq;prot=eq;name=Glyma18g28860.1 - Gm18 No
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