Gene family  

Sub-families
ORTHO013370 (14 genes in 10 species)
ORTHO014321 (12 genes in 9 species)
ORTHO023163 (5 genes in 5 species)
View all sub-families (10)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (3 genes)
ath
Arabidopsis thaliana (3 genes)
bdi
Brachypodium distachyon (3 genes)
cpa
Carica papaya (2 genes)
fve
Fragaria vesca (2 genes)
gma
Glycine max (8 genes)
mdo
Malus domestica (4 genes)
mes
Manihot esculenta (4 genes)
mtr
Medicago truncatula (2 genes)
osa
Oryza sativa ssp. japonica (3 genes)
osaindica
Oryza sativa ssp. indica (3 genes)
ptr
Populus trichocarpa (4 genes)
rco
Ricinus communis (2 genes)
sbi
Sorghum bicolor (3 genes)
smo
Selaginella moellendorffii (2 genes)
tca
Theobroma cacao (2 genes)
vvi
Vitis vinifera (1 gene)
zma
Zea mays (3 genes)



The gene family HOM002372 has 54 genes in 18 species (5 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 3, showing 20 records out of 54 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL1G37760 aly name=fgenesh2_kg.1__3657__AT1G35830.1;pid=473703;prot=eq;tid=473703 - scaffold_1 No
AL7G01910 aly name=fgenesh2_kg.7__187__AT4G39720.1;pid=490754;prot=eq;tid=490754 - scaffold_7 No
AL8G31960 aly name=fgenesh2_kg.8__2558__AT5G65170.1;pid=496742;prot=eq;tid=496742 + scaffold_8 No
AT1G35830 ath VQ motif-containing protein; CONTAINS InterPro DOMAIN/s: VQ (InterPro:IPR008889); BEST Arabidopsis thaliana protein match is: VQ motif-containing protein (TAIR:AT5G65170.1); Has 1167 Blast hits to 1059 proteins in 155 species: Archae - 0; Bacteria - 36; Metazoa - 369; Fungi - 192; Plants - 292; Viruses - 57; Other Eukaryotes - 221 (source: NCBI BLink).;VQ motif-containing protein transcript=eq;prot=eq; - 1 No
AT4G39720 ath VQ motif-containing protein; CONTAINS InterPro DOMAIN/s: VQ (InterPro:IPR008889); BEST Arabidopsis thaliana protein match is: VQ motif-containing protein (TAIR:AT1G35830.1); Has 406 Blast hits to 390 proteins in 39 species: Archae - 0; Bacteria - 0; Metazoa - 10; Fungi - 7; Plants - 145; Viruses - 0; Other Eukaryotes - 244 (source: NCBI BLink).;VQ motif-containing protein transcript=eq;prot=eq; - 4 No
AT5G65170 ath VQ motif-containing protein; CONTAINS InterPro DOMAIN/s: VQ (InterPro:IPR008889); BEST Arabidopsis thaliana protein match is: VQ motif-containing protein (TAIR:AT1G35830.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).;VQ motif-containing protein transcript=eq;prot=eq; + 5 No
BD1G60860 bdi pid=Bradi1g60860.1;tid=Bradi1g60860.1;GeneName=Bradi1g60860;transcript=eq;prot=eq - Bd1 Yes
BD3G35600 bdi pid=Bradi3g35600.1;tid=Bradi3g35600.1;GeneName=Bradi3g35600;transcript=eq;prot=eq + Bd3 No
BD4G29080 bdi pid=Bradi4g29080.1;tid=Bradi4g29080.1;GeneName=Bradi4g29080;transcript=eq;prot=eq + Bd4 No
CP00036G01190 cpa name=evm.TU.supercontig_36.119;pid=evm.TU.supercontig_36.119;prot=eq;transcript=eq + supercontig_36 No
CP00568G00010 cpa name=evm.TU.supercontig_568.1;pid=evm.TU.supercontig_568.1;prot=eq;transcript=eq + supercontig_568 No
FV0G23150 fve UPF0396 protein CG6066 (probable) transcript=eq;prot=eq;pid=gene16338 - scf0513168 No
FV5G19260 fve RING finger protein B (Protein rngB) (probable) transcript=eq;prot=eq;pid=gene22130 + LG5 No
GM04G11200 gma 04 pid=16255614;transcript=eq;prot=eq;name=Glyma04g11200.1 - Gm04 No
GM05G31340 gma 05 pid=16260278;transcript=eq;prot=eq;name=Glyma05g31340.1 + Gm05 No
GM06G10950 gma 06 pid=16262495;transcript=eq;prot=eq;name=Glyma06g10950.1 + Gm06 Yes
GM06G10960 gma 06 pid=16262496;transcript=eq;prot=eq;name=Glyma06g10960.1 - Gm06 No
GM08G14580 gma 08 pid=16271147;transcript=eq;prot=eq;name=Glyma08g14580.1 + Gm08 No
GM11G38180 gma 11 pid=16285798;transcript=eq;prot=eq;name=Glyma11g38180.1 - Gm11 No
GM14G34680 gma 14 pid=16296429;transcript=eq;prot=eq;name=Glyma14g34680.1 + Gm14 No
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