Gene family  

Sub-families
ORTHO003640 (29 genes in 21 species)
ORTHO025460 (5 genes in 1 species)
ORTHO063109 (2 genes in 2 species)
View all sub-families (3)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (1 gene)
ath
Arabidopsis thaliana (1 gene)
bdi
Brachypodium distachyon (1 gene)
cpa
Carica papaya (3 genes)
fve
Fragaria vesca (1 gene)
gma
Glycine max (3 genes)
lja
Lotus japonicus (2 genes)
mdo
Malus domestica (13 genes)
mes
Manihot esculenta (3 genes)
osa
Oryza sativa ssp. japonica (4 genes)
osaindica
Oryza sativa ssp. indica (3 genes)
ppa
Physcomitrella patens (2 genes)
ptr
Populus trichocarpa (2 genes)
rco
Ricinus communis (1 gene)
sbi
Sorghum bicolor (2 genes)
smo
Selaginella moellendorffii (6 genes)
tca
Theobroma cacao (2 genes)
vca
Volvox carteri (1 gene)
vvi
Vitis vinifera (2 genes)
zma
Zea mays (2 genes)



The gene family HOM002320 has 55 genes in 20 species (4 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 3, showing 20 records out of 55 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL8G18790 aly name=fgenesh1_pm.C_scaffold_8001076;pid=331733;prot=eq;tid=331733 - scaffold_8 No
AT5G53850 ath haloacid dehalogenase-like hydrolase family protein; FUNCTIONS IN: in 7 functions; INVOLVED IN: L-methionine salvage from methylthioadenosine, L-methionine salvage, metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Haloacid dehalogenase-like hydrolase (InterPro:IPR005834), 2,3-diketo-5-methylthio-1-phosphopentane phosphatase (InterPro:IPR010041), Class II aldolase/adducin, N-terminal (InterPro:IPR001303), HAD-superfamily hydrolase, subfamily IA, variant 1 (InterPro:IPR006439), Methylthioribulose-1-phosphate dehydratase (InterPro:IPR017714); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).;haloacid dehalogenase-like hydrolase family protein transcript=eq;prot=eq; - 5 No
BD3G57750 bdi acireductone synthase activity, phosphoglycolate phosphatase activity (Blast2GO) pid=Bradi3g57750.4;tid=Bradi3g57750.4;GeneName=Bradi3g57750;transcript=eq;prot=eq + Bd3 No
CP00080G00770 cpa name=evm.TU.supercontig_80.77;pid=evm.TU.supercontig_80.77;prot=eq;transcript=eq - supercontig_80 No
CP00083G00510 cpa name=evm.TU.supercontig_83.51;pid=evm.TU.supercontig_83.51;prot=eq;transcript=eq - supercontig_83 No
CP00083G00530 cpa name=evm.TU.supercontig_83.53;pid=evm.TU.supercontig_83.53;prot=eq;transcript=eq - supercontig_83 Yes
FV4G05350 fve Enolase-phosphatase E1 (probable) transcript=eq;prot=eq;pid=gene17098 - LG4 No
GM06G36620 gma 06 pid=16264385;transcript=eq;prot=eq;name=Glyma06g36620.1 + Gm06 No
GM12G35390 gma 12 pid=16288972;transcript=eq;prot=eq;name=Glyma12g35390.1 - Gm12 No
GM13G35120 gma 13 pid=16292671;transcript=eq;prot=eq;name=Glyma13g35120.1 + Gm13 No
LJ0G046420 lja partial;prot=eq;transcript=eq;scaffold=LjSGA_018124;name=LjSGA_018124.1 + LjSGA_018124 No
LJ3G004210 lja prot=eq;transcript=eq;scaffold=CM0282;name=chr3.CM0282.1080.nc + chr3 No
MD00G008340 mdo transcript=eq;prot=eq;pid=MDP0000405149;tid=MDP0000405149;contig=MDC000315.339 - MDC000315.339 No
MD00G032170 mdo transcript=eq;prot=eq;pid=MDP0000162465;tid=MDP0000162465;contig=MDC001354.534 + MDC001354.534 No
MD00G070530 mdo transcript=eq;prot=eq;pid=MDP0000271269;tid=MDP0000271269;contig=MDC002936.435 - MDC002936.435 No
MD00G123760 mdo transcript=eq;prot=eq;pid=MDP0000174107;tid=MDP0000174107;contig=MDC005263.197 - MDC005263.197 No
MD00G191950 mdo transcript=eq;prot=eq;pid=MDP0000620125;tid=MDP0000620125;contig=MDC008234.403 - MDC008234.403 No
MD00G343070 mdo transcript=eq;prot=eq;pid=MDP0000300315;tid=MDP0000300315;contig=MDC015332.337 - MDC015332.337 No
MD00G343090 mdo transcript=eq;prot=eq;pid=MDP0000140466;tid=MDP0000140466;contig=MDC015332.360 - MDC015332.360 No
MD00G343100 mdo transcript=eq;prot=eq;pid=MDP0000128567;tid=MDP0000128567;contig=MDC015332.362 + MDC015332.362 No
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