Gene family  

Sub-families
ORTHO004229 (27 genes in 23 species)
ORTHO009951 (19 genes in 18 species)
ORTHO052526 (2 genes in 1 species)
View all sub-families (3)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (5 genes)
ath
Arabidopsis thaliana (3 genes)
bdi
Brachypodium distachyon (2 genes)
cpa
Carica papaya (2 genes)
cre
Chlamydomonas reinhardtii (2 genes)
fve
Fragaria vesca (3 genes)
gma
Glycine max (6 genes)
lja
Lotus japonicus (1 gene)
mdo
Malus domestica (3 genes)
mes
Manihot esculenta (3 genes)
mrcc299
Micromonas sp. RCC299 (1 gene)
mtr
Medicago truncatula (2 genes)
olu
Ostreococcus lucimarinus (1 gene)
osa
Oryza sativa ssp. japonica (2 genes)
osaindica
Oryza sativa ssp. indica (2 genes)
ota
Ostreococcus tauri (1 gene)
ptr
Populus trichocarpa (3 genes)
rco
Ricinus communis (2 genes)
sbi
Sorghum bicolor (4 genes)
smo
Selaginella moellendorffii (1 gene)
tca
Theobroma cacao (2 genes)
vca
Volvox carteri (1 gene)
vvi
Vitis vinifera (2 genes)
zma
Zea mays (2 genes)



The gene family HOM002265 has 56 genes in 24 species (4 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 3, showing 20 records out of 56 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL1G15150 aly name=fgenesh2_kg.1__1569__AT1G14410.1;pid=471615;prot=eq;tid=471615 - scaffold_1 No
AL2G20000 aly name=scaffold_202038.1;pid=894964;prot=eq;tid=926477 - scaffold_2 No
AL2G20040 aly name=scaffold_202043.1;pid=894969;prot=eq;tid=926482 - scaffold_2 Yes
AL3G33850 aly name=scaffold_303609.1;pid=899639;prot=eq;tid=931152 - scaffold_3 No
AL5G01860 aly name=fgenesh2_kg.5__172__AT2G02740.1;pid=484180;prot=eq;tid=484180 + scaffold_5 No
AT1G14410 ath Encodes a homolog of the potato p24 protein. Binds single strand telomeric repeats. Negatively regulates telomerase activity and telomere length.;ssDNA-binding transcriptional regulator transcript=eq;prot=eq; - 1 No
AT1G71260 ath Encodes WHY2, a homolog of the potato p24 protein. It shares the conserved KGKAAL domain, a putative DNA-binding domain, with potato p24 and is localized to mitochondria and not the nucleus. WHY2 is a member of the Whirly family proteins present mainly in the plant kingdom performing various activities related to DNA metabolism. Crystal structure of Solanum tuberosum WHY2, a close homolog of Arabidopsis WHY2, reveal that Whirly proteins bind to single strand DNA to promote accurate repair of DNA double-strand breaks over an error-prone repair pathway.;WHIRLY 2 transcript=eq;prot=eq; - 1 No
AT2G02740 ath Encodes a homolog of the potato p24 protein. It shares the conserved KGKAAL domain, a putative DNA-binding domain, with potato p24 and is localized to the plastid and not the nucleus.;ssDNA-binding transcriptional regulator transcript=eq;prot=eq; + 2 No
BD1G51040 bdi pid=Bradi1g51040.1;tid=Bradi1g51040.1;GeneName=Bradi1g51040;transcript=eq;prot=eq - Bd1 No
BD3G04450 bdi pid=Bradi3g04450.1;tid=Bradi3g04450.1;GeneName=Bradi3g04450;transcript=eq;prot=eq - Bd3 No
CP00249G00070 cpa name=evm.TU.supercontig_249.7;pid=evm.TU.supercontig_249.7;prot=eq;transcript=eq - supercontig_249 No
CP01007G00040 cpa name=evm.TU.supercontig_1007.4;pid=evm.TU.supercontig_1007.4;prot=eq;transcript=eq - supercontig_1007 No
CR02G03830 cre name=Chlre2_kg.scaffold_7000356;pid=141529;prot=eq;tid=141529;transcript=eq + chromosome_2 Yes
CR02G03840 cre name=estExt_fgenesh2_pg.C_70372;pid=186648;prot=eq;tid=186648;transcript=eq + chromosome_2 No
FV0G06030 fve tRNA-specific 2-thiouridylase mnmA (probable) transcript=eq;prot=eq;pid=gene04012 - scf0513158 No
FV0G55620 fve hypothetical protein transcript=eq;prot=eq;pid=gene33605 + scf0511016 Yes
FV2G16360 fve NADH-ubiquinone oxidoreductase chain 2 (similar to) transcript=eq;prot=eq;pid=gene31174 - LG2 No
GM01G05000 gma 01 pid=16243452;transcript=eq;prot=eq;name=Glyma01g05000.1 + Gm01 No
GM02G02390 gma 02 pid=16246721;transcript=eq;prot=eq;name=Glyma02g02390.1 - Gm02 No
GM03G41270 gma 03 pid=16254119;transcript=eq;prot=eq;name=Glyma03g41270.1 + Gm03 No
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