Gene family  

Sub-families
ORTHO001102 (42 genes in 20 species)
ORTHO038248 (3 genes in 3 species)
ORTHO051819 (2 genes in 2 species)
View all sub-families (3)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (2 genes)
ath
Arabidopsis thaliana (2 genes)
bdi
Brachypodium distachyon (1 gene)
cpa
Carica papaya (2 genes)
fve
Fragaria vesca (3 genes)
gma
Glycine max (8 genes)
lja
Lotus japonicus (3 genes)
mdo
Malus domestica (8 genes)
mes
Manihot esculenta (2 genes)
mtr
Medicago truncatula (2 genes)
osa
Oryza sativa ssp. japonica (2 genes)
osaindica
Oryza sativa ssp. indica (1 gene)
ppa
Physcomitrella patens (1 gene)
ptr
Populus trichocarpa (3 genes)
rco
Ricinus communis (3 genes)
sbi
Sorghum bicolor (2 genes)
smo
Selaginella moellendorffii (1 gene)
tca
Theobroma cacao (3 genes)
vvi
Vitis vinifera (4 genes)
zma
Zea mays (3 genes)



The gene family HOM002261 has 56 genes in 20 species (4 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 3, showing 20 records out of 56 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL5G19050 aly name=fgenesh2_kg.5__1326__AT3G49720.1;pid=485334;prot=eq;tid=485334 - scaffold_5 No
AL8G32690 aly name=fgenesh1_pm.C_scaffold_8002140;pid=332797;prot=eq;tid=332797 - scaffold_8 No
AT3G49720 ath unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, Golgi apparatus, plasma membrane, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G65810.1); Has 64 Blast hits to 64 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 64; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). transcript=eq;prot=eq; - 3 No
AT5G65810 ath unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G49720.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). transcript=eq;prot=eq; - 5 No
BD2G02900 bdi pid=Bradi2g02900.1;tid=Bradi2g02900.1;GeneName=Bradi2g02900;transcript=eq;prot=eq - Bd2 No
CP00020G00780 cpa name=evm.TU.supercontig_20.78;pid=evm.TU.supercontig_20.78;prot=eq;transcript=eq + supercontig_20 No
CP00129G00610 cpa name=evm.TU.supercontig_129.61;pid=evm.TU.supercontig_129.61;prot=eq;transcript=eq - supercontig_129 No
FV0G20090 fve conserved hypothetical protein transcript=eq;prot=eq;pid=gene05652 + scf0513160 No
FV1G07420 fve Uncharacterized protein At3g49720 (similar to) transcript=eq;prot=eq;pid=gene26521 - LG1 No
FV2G03150 fve Uncharacterized protein At3g49720 (similar to) transcript=eq;prot=eq;pid=gene24712 + LG2 No
GM00G00150 gma 41 pid=16242698;transcript=eq;prot=eq;name=Glyma0041s00280.1 + scaffold_41 No
GM04G05140 gma 04 pid=16254913;transcript=eq;prot=eq;name=Glyma04g05140.1 + Gm04 No
GM05G23000 gma 05 pid=16259350;transcript=eq;prot=eq;name=Glyma05g23000.1 + Gm05 No
GM06G05220 gma 06 pid=16261786;transcript=eq;prot=eq;name=Glyma06g05220.1 + Gm06 No
GM13G32570 gma 13 pid=16292374;transcript=eq;prot=eq;name=Glyma13g32570.1 - Gm13 No
GM14G10310 gma 14 pid=16295046;transcript=eq;prot=eq;name=Glyma14g10310.1 + Gm14 No
GM15G06760 gma 15 pid=16297879;transcript=eq;prot=eq;name=Glyma15g06760.1 + Gm15 No
GM17G17000 gma 17 pid=16305857;transcript=eq;prot=eq;name=Glyma17g17000.1 - Gm17 No
LJ0G056680 lja partial;prot=eq;transcript=eq;scaffold=LjSGA_020675;name=LjSGA_020675.1 - LjSGA_020675 No
LJ0G135940 lja partial;prot=eq;transcript=eq;scaffold=LjSGA_042493;name=LjSGA_042493.2.1 - LjSGA_042493 No
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