Gene family  

Sub-families
ORTHO005590 (25 genes in 19 species)
ORTHO008554 (21 genes in 16 species)
ORTHO054701 (2 genes in 1 species)
View all sub-families (3)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (2 genes)
ath
Arabidopsis thaliana (2 genes)
bdi
Brachypodium distachyon (2 genes)
cpa
Carica papaya (3 genes)
fve
Fragaria vesca (4 genes)
gma
Glycine max (2 genes)
lja
Lotus japonicus (2 genes)
mdo
Malus domestica (14 genes)
mes
Manihot esculenta (2 genes)
mtr
Medicago truncatula (3 genes)
osa
Oryza sativa ssp. japonica (2 genes)
osaindica
Oryza sativa ssp. indica (1 gene)
ppa
Physcomitrella patens (2 genes)
ptr
Populus trichocarpa (3 genes)
rco
Ricinus communis (2 genes)
sbi
Sorghum bicolor (2 genes)
smo
Selaginella moellendorffii (2 genes)
tca
Theobroma cacao (2 genes)
vca
Volvox carteri (1 gene)
vvi
Vitis vinifera (1 gene)
zma
Zea mays (2 genes)



The gene family HOM002246 has 56 genes in 21 species (1 outlier gene).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 3, showing 20 records out of 56 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL1G50540 aly name=fgenesh1_pm.C_scaffold_1003580;pid=314800;prot=eq;tid=314800 + scaffold_1 No
AL3G29240 aly name=Al_scaffold_0003_2826;pid=874185;prot=eq;tid=905698 + scaffold_3 No
AT1G55870 ath Encodes a poly(A)-specific ribonuclease, AtPARN. Expression of AtPARN is upregulated by ABA or stress treatment. Mutant is hypersensitivity to salicylic acid as well as ABA.;Polynucleotidyl transferase, ribonuclease H-like superfamily protein transcript=eq;prot=eq; + 1 No
AT3G25430 ath Polynucleotidyl transferase, ribonuclease H-like superfamily protein; FUNCTIONS IN: ribonuclease activity, nucleic acid binding; INVOLVED IN: RNA modification; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Ribonuclease CAF1 (InterPro:IPR006941), Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337); BEST Arabidopsis thaliana protein match is: Polynucleotidyl transferase, ribonuclease H-like superfamily protein (TAIR:AT1G55870.1); Has 339 Blast hits to 335 proteins in 120 species: Archae - 0; Bacteria - 10; Metazoa - 154; Fungi - 41; Plants - 69; Viruses - 0; Other Eukaryotes - 65 (source: NCBI BLink).;Polynucleotidyl transferase, ribonuclease H-like superfamily protein transcript=eq;prot=eq; + 3 No
BD3G36960 bdi serine-type carboxypeptidase activity (Blast2GO) pid=Bradi3g36960.1;tid=Bradi3g36960.1;GeneName=Bradi3g36960;transcript=eq;prot=eq - Bd3 No
BD5G12847 bdi pid=Bradi5g12847.1;tid=Bradi5g12847.1;GeneName=Bradi5g12847;transcript=eq;prot=eq - Bd5 No
CP00008G00600 cpa name=evm.TU.supercontig_8.60;pid=evm.TU.supercontig_8.60;prot=eq;transcript=eq - supercontig_8 No
CP00008G00610 cpa name=evm.TU.supercontig_8.61;pid=evm.TU.supercontig_8.61;prot=eq;transcript=eq - supercontig_8 No
CP00012G01200 cpa name=evm.TU.supercontig_12.120;pid=evm.TU.supercontig_12.120;prot=eq;transcript=eq - supercontig_12 No
FV2G13280 fve Poly(A)-specific ribonuclease PARN-like (putative) transcript=eq;prot=eq;pid=gene17388 - LG2 No
FV2G40510 fve Transforming acidic coiled-coil-containing protein 2 (AZU-1) (probable) transcript=eq;prot=eq;pid=gene11687 + LG2 Yes
FV3G42230 fve Poly(A)-specific ribonuclease PARN (AtPARN) (putative) transcript=eq;prot=eq;pid=gene20592 + LG3 No
FV3G42450 fve Poly(A)-specific ribonuclease PARN (AtPARN) (probable) transcript=eq;prot=eq;pid=gene20610 - LG3 No
GM08G44260 gma 08 pid=16273790;transcript=eq;prot=eq;name=Glyma08g44260.1 - Gm08 No
GM18G08430 gma 18 pid=16308295;transcript=eq;prot=eq;name=Glyma18g08430.1 + Gm18 No
LJ0G076320 lja partial;prot=eq;transcript=eq;scaffold=LjSGA_025759;name=LjSGA_025759.1 - LjSGA_025759 No
LJ1G038240 lja partial;prot=eq;transcript=eq;scaffold=CM0800;name=chr1.CM0800.500.nd + chr1 No
MD00G002310 mdo transcript=eq;prot=eq;pid=MDP0000232512;tid=MDP0000232512;contig=MDC000091.164 + MDC000091.164 No
MD00G023100 mdo transcript=eq;prot=eq;pid=MDP0000264529;tid=MDP0000264529;contig=MDC000962.740 - MDC000962.740 No
MD00G157150 mdo transcript=eq;prot=eq;pid=MDP0000284483;tid=MDP0000284483;contig=MDC006747.126 + MDC006747.126 No
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