Gene family  

Sub-families
ORTHO003054 (30 genes in 18 species)
ORTHO019647 (6 genes in 5 species)
ORTHO026332 (4 genes in 4 species)
View all sub-families (8)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (4 genes)
ath
Arabidopsis thaliana (4 genes)
bdi
Brachypodium distachyon (5 genes)
cpa
Carica papaya (1 gene)
fve
Fragaria vesca (1 gene)
gma
Glycine max (5 genes)
lja
Lotus japonicus (3 genes)
mdo
Malus domestica (3 genes)
mes
Manihot esculenta (2 genes)
mtr
Medicago truncatula (2 genes)
osa
Oryza sativa ssp. japonica (4 genes)
osaindica
Oryza sativa ssp. indica (5 genes)
ptr
Populus trichocarpa (2 genes)
rco
Ricinus communis (1 gene)
sbi
Sorghum bicolor (4 genes)
smo
Selaginella moellendorffii (2 genes)
tca
Theobroma cacao (1 gene)
vvi
Vitis vinifera (1 gene)
zma
Zea mays (7 genes)



The gene family HOM002242 has 57 genes in 19 species (1 outlier gene).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 3, showing 20 records out of 57 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL1G40070 aly name=fgenesh2_kg.1__3810__AT1G45545.1;pid=473856;prot=eq;tid=473856 - scaffold_1 No
AL4G09180 aly name=fgenesh2_kg.4__577__AT2G26570.1;pid=481517;prot=eq;tid=481517 + scaffold_4 No
AL7G07860 aly name=fgenesh2_kg.7__784__AT4G33390.1;pid=491351;prot=eq;tid=491351 - scaffold_7 No
AL8G07900 aly name=fgenesh1_pm.C_scaffold_8000455;pid=331112;prot=eq;tid=331112 - scaffold_8 No
AT1G45545 ath Plant protein of unknown function (DUF827); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF827, plant (InterPro:IPR008545); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF827) (TAIR:AT5G42880.1); Has 129275 Blast hits to 70040 proteins in 3406 species: Archae - 1956; Bacteria - 28575; Metazoa - 54363; Fungi - 10498; Plants - 7741; Viruses - 526; Other Eukaryotes - 25616 (source: NCBI BLink).;Plant protein of unknown function (DUF827) transcript=eq;prot=eq; - 1 No
AT2G26570 ath Plant protein of unknown function (DUF827); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF827, plant (InterPro:IPR008545); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF827) (TAIR:AT4G33390.1); Has 151476 Blast hits to 77886 proteins in 3477 species: Archae - 2093; Bacteria - 37732; Metazoa - 61062; Fungi - 12741; Plants - 9509; Viruses - 541; Other Eukaryotes - 27798 (source: NCBI BLink).;Plant protein of unknown function (DUF827) transcript=eq;prot=eq; + 2 No
AT4G33390 ath Plant protein of unknown function (DUF827); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF827, plant (InterPro:IPR008545); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF827) (TAIR:AT2G26570.1); Has 166665 Blast hits to 84155 proteins in 3581 species: Archae - 2138; Bacteria - 38967; Metazoa - 69244; Fungi - 13477; Plants - 9635; Viruses - 620; Other Eukaryotes - 32584 (source: NCBI BLink).;Plant protein of unknown function (DUF827) transcript=eq;prot=eq; + 4 No
AT5G42880 ath Plant protein of unknown function (DUF827); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF827, plant (InterPro:IPR008545); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF827) (TAIR:AT1G45545.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).;Plant protein of unknown function (DUF827) transcript=eq;prot=eq; + 5 No
BD1G21080 bdi motor activity, ATPase activity (Blast2GO) pid=Bradi1g21080.1;tid=Bradi1g21080.1;GeneName=Bradi1g21080;transcript=eq;prot=eq + Bd1 No
BD1G60510 bdi motor activity, ATPase activity (Blast2GO) pid=Bradi1g60510.1;tid=Bradi1g60510.1;GeneName=Bradi1g60510;transcript=eq;prot=eq + Bd1 No
BD1G72370 bdi actin-dependent ATPase activity (Blast2GO) pid=Bradi1g72370.1;tid=Bradi1g72370.1;GeneName=Bradi1g72370;transcript=eq;prot=eq - Bd1 No
BD1G77940 bdi motor activity (Blast2GO) pid=Bradi1g77940.1;tid=Bradi1g77940.1;GeneName=Bradi1g77940;transcript=eq;prot=eq - Bd1 No
BD4G32150 bdi ATPase activity, coupled (Blast2GO) pid=Bradi4g32150.1;tid=Bradi4g32150.1;GeneName=Bradi4g32150;transcript=eq;prot=eq + Bd4 No
CP00049G00130 cpa name=evm.TU.supercontig_49.13;pid=evm.TU.supercontig_49.13;prot=eq;transcript=eq + supercontig_49 No
FV2G33900 fve Golgin subfamily A member 3 (GCP170) (probable) transcript=eq;prot=eq;pid=gene09094 - LG2 No
GM04G04100 gma 04 pid=16254799;transcript=eq;prot=eq;name=Glyma04g04100.1 + Gm04 No
GM06G04270 gma 06 pid=16261668;transcript=eq;prot=eq;name=Glyma06g04270.1 + Gm06 No
GM08G35480 gma 08 pid=16272934;transcript=eq;prot=eq;name=Glyma08g35480.1 - Gm08 No
GM14G09080 gma 14 pid=16294905;transcript=eq;prot=eq;name=Glyma14g09080.1 + Gm14 No
GM16G15790 gma 16 pid=16302213;transcript=eq;prot=eq;name=Glyma16g15790.1 - Gm16 No
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