Gene family  

Sub-families
ORTHO004942 (26 genes in 19 species)
ORTHO009547 (20 genes in 16 species)
ORTHO049906 (2 genes in 2 species)
View all sub-families (6)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (2 genes)
ath
Arabidopsis thaliana (2 genes)
bdi
Brachypodium distachyon (3 genes)
cpa
Carica papaya (2 genes)
cre
Chlamydomonas reinhardtii (1 gene)
fve
Fragaria vesca (2 genes)
gma
Glycine max (6 genes)
lja
Lotus japonicus (2 genes)
mdo
Malus domestica (4 genes)
mes
Manihot esculenta (2 genes)
mrcc299
Micromonas sp. RCC299 (1 gene)
mtr
Medicago truncatula (1 gene)
osa
Oryza sativa ssp. japonica (4 genes)
osaindica
Oryza sativa ssp. indica (5 genes)
ppa
Physcomitrella patens (2 genes)
ptr
Populus trichocarpa (5 genes)
rco
Ricinus communis (2 genes)
sbi
Sorghum bicolor (2 genes)
tca
Theobroma cacao (2 genes)
vca
Volvox carteri (1 gene)
vvi
Vitis vinifera (2 genes)
zma
Zea mays (4 genes)



The gene family HOM002225 has 57 genes in 22 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 3, showing 20 records out of 57 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL2G27250 aly name=fgenesh2_kg.2__2121__AT1G78230.1;pid=476991;prot=eq;tid=476991 + scaffold_2 No
AL6G38010 aly name=fgenesh2_kg.6__3368__AT4G03260.1;pid=490234;prot=eq;tid=490234 - scaffold_6 No
AT1G78230 ath Outer arm dynein light chain 1 protein; INVOLVED IN: biological_process unknown; LOCATED IN: vacuole; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat, typical subtype (InterPro:IPR003591), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: Outer arm dynein light chain 1 protein (TAIR:AT4G03260.2); Has 24271 Blast hits to 14439 proteins in 747 species: Archae - 6; Bacteria - 9514; Metazoa - 8699; Fungi - 1002; Plants - 3127; Viruses - 44; Other Eukaryotes - 1879 (source: NCBI BLink).;Outer arm dynein light chain 1 protein transcript=eq;prot=eq; + 1 No
AT4G03260 ath Outer arm dynein light chain 1 protein; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: Outer arm dynein light chain 1 protein (TAIR:AT1G78230.1); Has 15176 Blast hits to 10896 proteins in 720 species: Archae - 14; Bacteria - 5530; Metazoa - 6175; Fungi - 776; Plants - 1251; Viruses - 25; Other Eukaryotes - 1405 (source: NCBI BLink).;Outer arm dynein light chain 1 protein transcript=eq;prot=eq; + 4 No
BD1G59430 bdi pid=Bradi1g59430.1;tid=Bradi1g59430.1;GeneName=Bradi1g59430;transcript=eq;prot=eq - Bd1 No
BD1G71840 bdi amine receptor activity (Blast2GO) pid=Bradi1g71840.1;tid=Bradi1g71840.1;GeneName=Bradi1g71840;transcript=eq;prot=eq + Bd1 No
BD3G23360 bdi G-protein coupled receptor activity (Blast2GO) pid=Bradi3g23360.1;tid=Bradi3g23360.1;GeneName=Bradi3g23360;transcript=eq;prot=eq - Bd3 No
CP00034G00530 cpa name=evm.TU.supercontig_34.53;pid=evm.TU.supercontig_34.53;prot=eq;transcript=eq + supercontig_34 No
CP00036G01420 cpa name=evm.TU.supercontig_36.142;pid=evm.TU.supercontig_36.142;prot=eq;transcript=eq + supercontig_36 No
CR09G05220 cre name=e_gwW.30.83.1;pid=119366;prot=eq;tid=119366;transcript=eq - chromosome_9 No
FV3G04220 fve Protein phosphatase 1 regulatory subunit pprA (probable) transcript=eq;prot=eq;pid=gene02006 - LG3 No
FV5G39540 fve Protein phosphatase 1 regulatory subunit pprA (probable) transcript=eq;prot=eq;pid=gene28663 + LG5 No
GM04G10940 gma 04 pid=16255583;transcript=eq;prot=eq;name=Glyma04g10940.1 - Gm04 No
GM06G10780 gma 06 pid=16262470;transcript=eq;prot=eq;name=Glyma06g10780.1 - Gm06 No
GM06G45610 gma 06 pid=16265277;transcript=eq;prot=eq;name=Glyma06g45610.1 - Gm06 No
GM12G11240 gma 12 pid=16287161;transcript=eq;prot=eq;name=Glyma12g11240.1 + Gm12 No
GM13G01760 gma 13 pid=16289367;transcript=eq;prot=eq;name=Glyma13g01760.1 - Gm13 No
GM14G35060 gma 14 pid=16296466;transcript=eq;prot=eq;name=Glyma14g35060.1 + Gm14 No
LJ0G153550 lja partial;prot=eq;transcript=eq;scaffold=LjSGA_048175;name=LjSGA_048175.2 + LjSGA_048175 No
LJ3G028300 lja prot=eq;transcript=eq;scaffold=CM0152;name=chr3.CM0152.30.nc - chr3 No
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