Gene family  

Sub-families
ORTHO008943 (21 genes in 18 species)
ORTHO011785 (16 genes in 11 species)
ORTHO035661 (3 genes in 1 species)
View all sub-families (5)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (4 genes)
ath
Arabidopsis thaliana (3 genes)
bdi
Brachypodium distachyon (2 genes)
cpa
Carica papaya (2 genes)
fve
Fragaria vesca (1 gene)
gma
Glycine max (8 genes)
lja
Lotus japonicus (4 genes)
mdo
Malus domestica (9 genes)
mes
Manihot esculenta (4 genes)
mtr
Medicago truncatula (6 genes)
osa
Oryza sativa ssp. japonica (1 gene)
osaindica
Oryza sativa ssp. indica (2 genes)
ptr
Populus trichocarpa (3 genes)
rco
Ricinus communis (2 genes)
sbi
Sorghum bicolor (1 gene)
tca
Theobroma cacao (2 genes)
vvi
Vitis vinifera (1 gene)
zma
Zea mays (2 genes)



The gene family HOM002213 has 57 genes in 18 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 3, showing 20 records out of 57 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL0G06410 aly name=fgenesh1_pg.C_scaffold_236000001;pid=359442;prot=eq;tid=359442 + scaffold_236 No
AL1G12520 aly name=Al_scaffold_0001_1233;pid=879466;prot=eq;tid=910979 - scaffold_1 No
AL7G25880 aly name=fgenesh2_kg.7__2589__AT4G17210.1;pid=493156;prot=eq;tid=493156 + scaffold_7 No
AL8G21250 aly name=fgenesh2_kg.8__1484__AT5G55860.1;pid=495668;prot=eq;tid=495668 + scaffold_8 No
AT1G12150 ath Plant protein of unknown function (DUF827); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF827, plant (InterPro:IPR008545); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF827) (TAIR:AT4G17210.1); Has 175296 Blast hits to 90319 proteins in 3640 species: Archae - 2475; Bacteria - 39608; Metazoa - 72017; Fungi - 13793; Plants - 10094; Viruses - 656; Other Eukaryotes - 36653 (source: NCBI BLink).;Plant protein of unknown function (DUF827) transcript=eq;prot=eq; - 1 No
AT4G17210 ath Plant protein of unknown function (DUF827); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF827, plant (InterPro:IPR008545); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF827) (TAIR:AT1G12150.1); Has 102236 Blast hits to 56929 proteins in 2947 species: Archae - 1648; Bacteria - 15131; Metazoa - 47764; Fungi - 8786; Plants - 5689; Viruses - 408; Other Eukaryotes - 22810 (source: NCBI BLink).;Plant protein of unknown function (DUF827) transcript=eq;prot=eq; - 4 No
AT5G55860 ath Plant protein of unknown function (DUF827); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF827, plant (InterPro:IPR008545); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF827) (TAIR:AT1G12150.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).;Plant protein of unknown function (DUF827) transcript=eq;prot=eq; + 5 No
BD4G26287 bdi pid=Bradi4g26287.1;tid=Bradi4g26287.1;GeneName=Bradi4g26287;transcript=eq;prot=eq - Bd4 No
BD4G39210 bdi ATPase activity, coupled (Blast2GO) pid=Bradi4g39210.1;tid=Bradi4g39210.1;GeneName=Bradi4g39210;transcript=eq;prot=eq - Bd4 No
CP00012G01250 cpa name=evm.TU.supercontig_12.125;pid=evm.TU.supercontig_12.125;prot=eq;transcript=eq + supercontig_12 No
CP00027G02260 cpa name=evm.TU.supercontig_27.227;pid=evm.TU.supercontig_27.227;prot=eq;transcript=eq - supercontig_27 No
FV3G41990 fve Protein PLASTID MOVEMENT IMPAIRED 2 (probable) transcript=eq;prot=eq;pid=gene20543 - LG3 No
GM02G47090 gma 02 pid=16250470;transcript=eq;prot=eq;name=Glyma02g47090.1 + Gm02 No
GM07G39880 gma 07 pid=16269326;transcript=eq;prot=eq;name=Glyma07g39880.1 + Gm07 No
GM08G44330 gma 08 pid=16273798;transcript=eq;prot=eq;name=Glyma08g44330.1 + Gm08 No
GM09G01770 gma 09 pid=16274454;transcript=eq;prot=eq;name=Glyma09g01770.1 + Gm09 No
GM14G01650 gma 14 pid=16293990;transcript=eq;prot=eq;name=Glyma14g01650.1 - Gm14 No
GM15G12720 gma 15 pid=16298570;transcript=eq;prot=eq;name=Glyma15g12720.1 + Gm15 No
GM17G00900 gma 17 pid=16303972;transcript=eq;prot=eq;name=Glyma17g00900.1 - Gm17 No
GM18G08390 gma 18 pid=16308291;transcript=eq;prot=eq;name=Glyma18g08390.1 - Gm18 No
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