Gene family  

Sub-families
ORTHO004106 (28 genes in 19 species)
ORTHO010383 (19 genes in 18 species)
ORTHO038150 (3 genes in 1 species)
View all sub-families (3)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (6 genes)
ath
Arabidopsis thaliana (6 genes)
bdi
Brachypodium distachyon (2 genes)
cpa
Carica papaya (2 genes)
fve
Fragaria vesca (2 genes)
gma
Glycine max (4 genes)
lja
Lotus japonicus (2 genes)
mdo
Malus domestica (5 genes)
mes
Manihot esculenta (2 genes)
mtr
Medicago truncatula (5 genes)
osa
Oryza sativa ssp. japonica (2 genes)
osaindica
Oryza sativa ssp. indica (2 genes)
ppa
Physcomitrella patens (2 genes)
ptr
Populus trichocarpa (3 genes)
rco
Ricinus communis (3 genes)
sbi
Sorghum bicolor (2 genes)
smo
Selaginella moellendorffii (1 gene)
tca
Theobroma cacao (2 genes)
vca
Volvox carteri (1 gene)
vvi
Vitis vinifera (2 genes)
zma
Zea mays (2 genes)



The gene family HOM002184 has 58 genes in 21 species (1 outlier gene).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 3, showing 20 records out of 58 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL7G38820 aly name=scaffold_704095.1;pid=916353;prot=eq;tid=947866 + scaffold_7 No
AL7G38830 aly name=scaffold_704096.1;pid=916354;prot=eq;tid=947867 + scaffold_7 No
AL7G38840 aly name=scaffold_704097.1;pid=916355;prot=eq;tid=947868 + scaffold_7 No
AL7G38850 aly name=scaffold_704098.1;pid=916356;prot=eq;tid=947869 + scaffold_7 No
AL7G38860 aly name=fgenesh2_kg.7__3474__AT5G39450.1;pid=494041;prot=eq;tid=494041 - scaffold_7 No
AL8G30550 aly name=fgenesh2_kg.8__2399__AT5G63910.1;pid=496583;prot=eq;tid=496583 - scaffold_8 No
AT5G39450 ath F-box family protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT5G39460.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).;F-box family protein transcript=eq;prot=eq; + 5 No
AT5G39460 ath F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT5G39480.1); Has 56 Blast hits to 54 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 54; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).;F-box family protein transcript=eq;prot=eq; - 5 No
AT5G39470 ath F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT5G39460.1); Has 36 Blast hits to 36 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 36; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).;F-box family protein transcript=eq;prot=eq; - 5 No
AT5G39480 ath F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT5G39490.1); Has 54 Blast hits to 54 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 52; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).;F-box family protein transcript=eq;prot=eq; - 5 No
AT5G39490 ath F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT5G39480.1); Has 54 Blast hits to 54 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 52; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).;F-box family protein transcript=eq;prot=eq; - 5 No
AT5G63910 ath Encodes a farnesylcysteine lyase (EC 1.8.3.5) involved in a salvage /detoxification pathway of farnesylcysteine (FC) residues that are liberated during the degradation of prenylated proteins. Because FC is a competitive inhibitor of prenylcysteine methyltransferases involved in the down-regulation of ABA signaling, fcly mutants with elevated FC levels are hypersensitive to ABA. The protein also appears to be glycosylated when translated in vitro in the presence of microsomal membranes and it likely requires FAD for enzymatic activity.;farnesylcysteine lyase transcript=eq;prot=eq; - 5 No
BD3G13220 bdi F-Box pid=Bradi3g13220.1;tid=Bradi3g13220.1;GeneName=Bradi3g13220;transcript=eq;prot=eq - Bd3 No
BD5G27617 bdi pid=Bradi5g27617.1;tid=Bradi5g27617.1;GeneName=Bradi5g27617;transcript=eq;prot=eq + Bd5 No
CP00037G00040 cpa name=evm.TU.supercontig_37.4;pid=evm.TU.supercontig_37.4;prot=eq;transcript=eq + supercontig_37 No
CP00037G00050 cpa name=evm.TU.supercontig_37.5;pid=evm.TU.supercontig_37.5;prot=eq;transcript=eq + supercontig_37 No
FV0G21600 fve F-box protein At5g39450 (probable) transcript=eq;prot=eq;pid=gene16175 - scf0513168 No
FV0G21650 fve Probable prenylcysteine oxidase, Precursor (similar to) transcript=eq;prot=eq;pid=gene16180 + scf0513168 No
GM05G32750 gma 05 pid=16260459;transcript=eq;prot=eq;name=Glyma05g32750.1 + Gm05 No
GM06G16220 gma 06 pid=16263138;transcript=eq;prot=eq;name=Glyma06g16220.1 + Gm06 No
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