Gene family  

Sub-families
ORTHO006270 (24 genes in 22 species)
ORTHO013498 (13 genes in 13 species)
ORTHO033027 (3 genes in 3 species)
View all sub-families (6)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (2 genes)
ath
Arabidopsis thaliana (3 genes)
bdi
Brachypodium distachyon (3 genes)
cpa
Carica papaya (4 genes)
cre
Chlamydomonas reinhardtii (1 gene)
fve
Fragaria vesca (6 genes)
gma
Glycine max (3 genes)
lja
Lotus japonicus (3 genes)
mdo
Malus domestica (5 genes)
mes
Manihot esculenta (2 genes)
mrcc299
Micromonas sp. RCC299 (1 gene)
mtr
Medicago truncatula (3 genes)
olu
Ostreococcus lucimarinus (2 genes)
osa
Oryza sativa ssp. japonica (3 genes)
osaindica
Oryza sativa ssp. indica (1 gene)
ota
Ostreococcus tauri (2 genes)
ppa
Physcomitrella patens (3 genes)
ptr
Populus trichocarpa (1 gene)
rco
Ricinus communis (2 genes)
sbi
Sorghum bicolor (2 genes)
tca
Theobroma cacao (2 genes)
vca
Volvox carteri (1 gene)
vvi
Vitis vinifera (2 genes)
zma
Zea mays (1 gene)



The gene family HOM002172 has 58 genes in 24 species (11 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
This page uses the Flash plugin.




Index of genes with 1 constraints:

Page 1 of 3, showing 20 records out of 58 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL1G19010 aly name=scaffold_102016.1;pid=889222;prot=eq;tid=920735 + scaffold_1 No
AL1G30550 aly name=fgenesh2_kg.1__3122__AT1G29630.2;pid=473168;prot=eq;tid=473168 + scaffold_1 No
AT1G18090 ath 5'-3' exonuclease family protein; FUNCTIONS IN: DNA binding, catalytic activity, nuclease activity; INVOLVED IN: DNA repair; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: XPG conserved site (InterPro:IPR019974), XPG N-terminal (InterPro:IPR006085), DNA repair protein (XPGC)/yeast Rad (InterPro:IPR006084), 5'-3' exonuclease, C-terminal subdomain (InterPro:IPR020045), Helix-hairpin-helix motif, class 2 (InterPro:IPR008918), XPG/RAD2 endonuclease (InterPro:IPR006086); BEST Arabidopsis thaliana protein match is: 5'-3' exonuclease family protein (TAIR:AT1G29630.2); Has 2134 Blast hits to 2045 proteins in 397 species: Archae - 265; Bacteria - 69; Metazoa - 518; Fungi - 574; Plants - 189; Viruses - 16; Other Eukaryotes - 503 (source: NCBI BLink).;5'-3' exonuclease family protein transcript=eq;prot=eq; + 1 No
AT1G29630 ath 5'-3' exonuclease family protein; FUNCTIONS IN: DNA binding, catalytic activity, nuclease activity; INVOLVED IN: DNA repair; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: XPG conserved site (InterPro:IPR019974), XPG N-terminal (InterPro:IPR006085), DNA repair protein (XPGC)/yeast Rad (InterPro:IPR006084), 5'-3' exonuclease, C-terminal subdomain (InterPro:IPR020045), Helix-hairpin-helix motif, class 2 (InterPro:IPR008918), XPG/RAD2 endonuclease (InterPro:IPR006086); BEST Arabidopsis thaliana protein match is: 5'-3' exonuclease family protein (TAIR:AT1G18090.2); Has 2407 Blast hits to 2171 proteins in 377 species: Archae - 277; Bacteria - 0; Metazoa - 635; Fungi - 677; Plants - 227; Viruses - 36; Other Eukaryotes - 555 (source: NCBI BLink).;5'-3' exonuclease family protein transcript=eq;prot=eq; + 1 No
AT2G02550 ath PIN domain-like family protein; FUNCTIONS IN: nuclease activity; INVOLVED IN: DNA repair; CONTAINS InterPro DOMAIN/s: XPG N-terminal (InterPro:IPR006085), DNA repair protein (XPGC)/yeast Rad (InterPro:IPR006084); Has 379 Blast hits to 379 proteins in 170 species: Archae - 3; Bacteria - 0; Metazoa - 112; Fungi - 132; Plants - 48; Viruses - 0; Other Eukaryotes - 84 (source: NCBI BLink).;PIN domain-like family protein transcript=eq;prot=eq; + 2 Yes
BD1G41770 bdi single-stranded DNA specific 5'-3' exodeoxyribonuclease activity, double-stranded DNA specific 5'-3' exodeoxyribonuclease activity (Blast2GO) pid=Bradi1g41770.1;tid=Bradi1g41770.1;GeneName=Bradi1g41770;transcript=eq;prot=eq - Bd1 No
BD2G51637 bdi pid=Bradi2g51637.1;tid=Bradi2g51637.1;GeneName=Bradi2g51637;transcript=eq;prot=eq + Bd2 No
BD2G51650 bdi pid=Bradi2g51650.1;tid=Bradi2g51650.1;GeneName=Bradi2g51650;transcript=eq;prot=eq + Bd2 Yes
CP00003G04300 cpa name=evm.TU.supercontig_3.430;pid=evm.TU.supercontig_3.430;prot=eq;transcript=eq + supercontig_3 No
CP00003G04310 cpa name=evm.TU.supercontig_3.431;pid=evm.TU.supercontig_3.431;prot=eq;transcript=eq + supercontig_3 Yes
CP00017G01470 cpa name=evm.TU.supercontig_17.147;pid=evm.TU.supercontig_17.147;prot=eq;transcript=eq - supercontig_17 No
CP00017G01480 cpa name=evm.TU.supercontig_17.148;pid=evm.TU.supercontig_17.148;prot=eq;transcript=eq - supercontig_17 No
CR07G08660 cre name=e_gwW.71.49.1;pid=122732;prot=eq;tid=122732;transcript=eq - chromosome_7 No
FV0G25840 fve Exonuclease 1 (probable) transcript=eq;prot=eq;pid=gene16594 + scf0513168 No
FV3G08610 fve Exonuclease 1 (probable) transcript=eq;prot=eq;pid=gene24876 + LG3 No
FV4G23490 fve Exonuclease 1 (probable) transcript=eq;prot=eq;pid=gene00813 + LG4 No
FV5G16970 fve Exonuclease 1 (probable) transcript=eq;prot=eq;pid=gene09411 - LG5 No
FV7G00750 fve Exonuclease 1 (probable) transcript=eq;prot=eq;pid=gene00412 + LG7 No
FV7G00760 fve Coat protein (probable) transcript=eq;prot=eq;pid=gene00413 + LG7 Yes
GM05G29660 gma 05 pid=16260079;transcript=eq;prot=eq;name=Glyma05g29660.1 - Gm05 No
<< previous
1 | 2 | 3 next >>

Download genes

Include following columns
gene_id
species
description
comment
strand
chr
outlier