Gene family  

Sub-families
ORTHO002000 (34 genes in 24 species)
ORTHO037471 (3 genes in 3 species)
ORTHO076543 (2 genes in 1 species)
View all sub-families (3)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (4 genes)
ath
Arabidopsis thaliana (1 gene)
bdi
Brachypodium distachyon (2 genes)
cpa
Carica papaya (1 gene)
cre
Chlamydomonas reinhardtii (2 genes)
fve
Fragaria vesca (1 gene)
gma
Glycine max (6 genes)
lja
Lotus japonicus (3 genes)
mdo
Malus domestica (3 genes)
mes
Manihot esculenta (1 gene)
mrcc299
Micromonas sp. RCC299 (3 genes)
mtr
Medicago truncatula (1 gene)
olu
Ostreococcus lucimarinus (2 genes)
osa
Oryza sativa ssp. japonica (1 gene)
osaindica
Oryza sativa ssp. indica (4 genes)
ota
Ostreococcus tauri (2 genes)
ppa
Physcomitrella patens (2 genes)
ptr
Populus trichocarpa (2 genes)
rco
Ricinus communis (5 genes)
sbi
Sorghum bicolor (2 genes)
tca
Theobroma cacao (1 gene)
vca
Volvox carteri (1 gene)
vvi
Vitis vinifera (6 genes)
zma
Zea mays (2 genes)



The gene family HOM002154 has 58 genes in 24 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 3, showing 20 records out of 58 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL0G00360 aly name=Al_scaffold_0009_35;pid=883553;prot=eq;tid=915066 + scaffold_9 No
AL4G01710 aly name=fgenesh1_pm.C_scaffold_4000124;pid=320067;prot=eq;tid=320067 - scaffold_4 No
AL5G13750 aly name=Al_scaffold_0005_1324;pid=865845;prot=eq;tid=897358 - scaffold_5 No
AL6G21140 aly name=Al_scaffold_0006_2014;pid=862505;prot=eq;tid=894018 + scaffold_6 No
AT2G22250 ath aspartate aminotransferase (AAT); FUNCTIONS IN: L-aspartate:2-oxoglutarate aminotransferase activity, transferase activity, transferring nitrogenous groups, pyridoxal phosphate binding, catalytic activity; INVOLVED IN: embryo development ending in seed dormancy; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aminotransferase, class I/classII (InterPro:IPR004839), Pyridoxal phosphate-dependent transferase, major domain (InterPro:IPR015424), Aminotransferases, class-I, pyridoxal-phosphate-binding site (InterPro:IPR004838), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421); BEST Arabidopsis thaliana protein match is: Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (TAIR:AT1G77670.1); Has 50315 Blast hits to 50311 proteins in 3104 species: Archae - 1094; Bacteria - 34657; Metazoa - 783; Fungi - 895; Plants - 1393; Viruses - 0; Other Eukaryotes - 11493 (source: NCBI BLink).;aspartate aminotransferase transcript=eq;prot=eq; - 2 No
BD2G24300 bdi aspartate transaminase activity (Blast2GO) pid=Bradi2g24300.1;tid=Bradi2g24300.1;GeneName=Bradi2g24300;transcript=eq;prot=eq + Bd2 No
BD2G56330 bdi aspartate transaminase activity (Blast2GO) pid=Bradi2g56330.1;tid=Bradi2g56330.1;GeneName=Bradi2g56330;transcript=eq;prot=eq + Bd2 No
CP00020G02280 cpa name=evm.TU.supercontig_20.228;pid=evm.TU.supercontig_20.228;prot=eq;transcript=eq - supercontig_20 No
CR02G15900 cre name=pasa_Sanger_mRNA19814;pid=415206;prot=eq;tid=410196;transcript=eq + chromosome_2 No
CR13G07950 cre name=OVA_estExt_GenewiseW_1.C_380095;pid=206390;prot=eq;tid=206395;transcript=eq - chromosome_13 No
FV6G00440 fve Aspartate aminotransferase (AspAT) (probable) transcript=eq;prot=eq;pid=gene31741 - LG6 No
GM05G31490 gma 05 pid=16260297;transcript=eq;prot=eq;name=Glyma05g31490.1 - Gm05 No
GM08G14720 gma 08 pid=16271165;transcript=eq;prot=eq;name=Glyma08g14720.1 - Gm08 No
GM11G36190 gma 11 pid=16285564;transcript=eq;prot=eq;name=Glyma11g36190.1 + Gm11 No
GM11G36200 gma 11 pid=16285565;transcript=eq;prot=eq;name=Glyma11g36200.1 + Gm11 No
GM18G02250 gma 18 pid=16307672;transcript=eq;prot=eq;name=Glyma18g02250.1 - Gm18 No
GM18G10650 gma 18 pid=16308506;transcript=eq;prot=eq;name=Glyma18g10650.1 - Gm18 No
LJ0G392020 lja partial;prot=eq;transcript=eq;scaffold=LjSGA_143854;name=LjSGA_143854.1 - LjSGA_143854 No
LJ4G029870 lja partial;prot=eq;transcript=eq;scaffold=CM0307;name=chr4.CM0307.10.nc + chr4 No
LJ6G003720 lja partial;prot=eq;transcript=eq;scaffold=LjT23A02;name=chr6.LjT23A02.90.nc - chr6 No
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