Gene family  

Sub-families
ORTHO003396 (29 genes in 19 species)
ORTHO023553 (5 genes in 4 species)
ORTHO032227 (3 genes in 3 species)
View all sub-families (7)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (4 genes)
ath
Arabidopsis thaliana (5 genes)
bdi
Brachypodium distachyon (2 genes)
cpa
Carica papaya (2 genes)
fve
Fragaria vesca (2 genes)
gma
Glycine max (6 genes)
lja
Lotus japonicus (2 genes)
mdo
Malus domestica (2 genes)
mes
Manihot esculenta (2 genes)
mtr
Medicago truncatula (1 gene)
osa
Oryza sativa ssp. japonica (3 genes)
osaindica
Oryza sativa ssp. indica (5 genes)
ppa
Physcomitrella patens (2 genes)
ptr
Populus trichocarpa (6 genes)
rco
Ricinus communis (2 genes)
sbi
Sorghum bicolor (5 genes)
smo
Selaginella moellendorffii (2 genes)
tca
Theobroma cacao (2 genes)
vvi
Vitis vinifera (2 genes)
zma
Zea mays (2 genes)



The gene family HOM002140 has 59 genes in 20 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 3, showing 20 records out of 59 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL3G12100 aly name=fgenesh2_kg.3__1216__AT3G11700.1;pid=478515;prot=eq;tid=478515 + scaffold_3 No
AL4G21290 aly name=Al_scaffold_0004_2086;pid=869923;prot=eq;tid=901436 + scaffold_4 No
AL5G22160 aly name=fgenesh2_kg.5__1596__AT3G52370.1;pid=485604;prot=eq;tid=485604 + scaffold_5 No
AL6G06050 aly name=fgenesh2_kg.6__582__AT5G06390.1;pid=487448;prot=eq;tid=487448 + scaffold_6 No
AT2G35860 ath FASCICLIN-like arabinogalactan protein 16 precursor (FLA16); INVOLVED IN: cell adhesion; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: FAS1 domain (InterPro:IPR000782); BEST Arabidopsis thaliana protein match is: FASCICLIN-like arabinogalactan protein 15 precursor (TAIR:AT3G52370.1); Has 1005 Blast hits to 970 proteins in 256 species: Archae - 17; Bacteria - 426; Metazoa - 148; Fungi - 43; Plants - 238; Viruses - 1; Other Eukaryotes - 132 (source: NCBI BLink).;FASCICLIN-like arabinogalactan protein 16 precursor transcript=eq;prot=eq; + 2 No
AT3G11700 ath FASCICLIN-like arabinogalactan protein 18 precursor (FLA18); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to cyclopentenone, cell adhesion; LOCATED IN: vacuole; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: FAS1 domain (InterPro:IPR000782); BEST Arabidopsis thaliana protein match is: FASCICLIN-like arabinogalactan protein 17 precursor (TAIR:AT5G06390.1); Has 488 Blast hits to 470 proteins in 128 species: Archae - 2; Bacteria - 195; Metazoa - 32; Fungi - 4; Plants - 192; Viruses - 0; Other Eukaryotes - 63 (source: NCBI BLink).;FASCICLIN-like arabinogalactan protein 18 precursor transcript=eq;prot=eq; + 3 No
AT3G52370 ath FASCICLIN-like arabinogalactan protein 15 precursor (FLA15); INVOLVED IN: cell adhesion; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: FAS1 domain (InterPro:IPR000782); BEST Arabidopsis thaliana protein match is: FASCICLIN-like arabinogalactan protein 16 precursor (TAIR:AT2G35860.1); Has 1194 Blast hits to 1139 proteins in 270 species: Archae - 8; Bacteria - 524; Metazoa - 184; Fungi - 15; Plants - 237; Viruses - 3; Other Eukaryotes - 223 (source: NCBI BLink).;FASCICLIN-like arabinogalactan protein 15 precursor transcript=eq;prot=eq; + 3 No
AT5G05650 ath BEST Arabidopsis thaliana protein match is: FASCICLIN-like arabinogalactan protein 17 precursor (TAIR:AT5G06390.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). transcript=eq;prot=eq; - 5 No
AT5G06390 ath FASCICLIN-like arabinogalactan protein 17 precursor (FLA17); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: cell adhesion; LOCATED IN: vacuole; EXPRESSED IN: guard cell; CONTAINS InterPro DOMAIN/s: FAS1 domain (InterPro:IPR000782); BEST Arabidopsis thaliana protein match is: FASCICLIN-like arabinogalactan protein 18 precursor (TAIR:AT3G11700.1); Has 803 Blast hits to 777 proteins in 229 species: Archae - 10; Bacteria - 420; Metazoa - 40; Fungi - 21; Plants - 196; Viruses - 1; Other Eukaryotes - 115 (source: NCBI BLink).;FASCICLIN-like arabinogalactan protein 17 precursor transcript=eq;prot=eq; + 5 No
BD1G06290 bdi hyaluronic acid binding (Blast2GO) pid=Bradi1g06290.1;tid=Bradi1g06290.1;GeneName=Bradi1g06290;transcript=eq;prot=eq + Bd1 No
BD1G57040 bdi low-density lipoprotein receptor activity (Blast2GO) pid=Bradi1g57040.1;tid=Bradi1g57040.1;GeneName=Bradi1g57040;transcript=eq;prot=eq + Bd1 No
CP00033G01060 cpa name=evm.TU.supercontig_33.106;pid=evm.TU.supercontig_33.106;prot=eq;transcript=eq + supercontig_33 No
CP00222G00250 cpa name=evm.TU.supercontig_222.25;pid=evm.TU.supercontig_222.25;prot=eq;transcript=eq + supercontig_222 No
FV3G40730 fve Fasciclin-like arabinogalactan protein 17, Precursor (putative) transcript=eq;prot=eq;pid=gene07711 + LG3 No
FV6G28500 fve Fasciclin-like arabinogalactan protein 17, Precursor (putative) transcript=eq;prot=eq;pid=gene18252 + LG6 No
GM03G36260 gma 03 pid=16253517;transcript=eq;prot=eq;name=Glyma03g36260.1 - Gm03 No
GM06G46530 gma 06 pid=16265379;transcript=eq;prot=eq;name=Glyma06g46530.1 + Gm06 No
GM12G10240 gma 12 pid=16287060;transcript=eq;prot=eq;name=Glyma12g10240.1 - Gm12 No
GM12G31690 gma 12 pid=16288552;transcript=eq;prot=eq;name=Glyma12g31690.1 - Gm12 No
GM13G38730 gma 13 pid=16293079;transcript=eq;prot=eq;name=Glyma13g38730.1 + Gm13 No
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