Gene family  

Sub-families
No subfamilies present
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (3 genes)
ath
Arabidopsis thaliana (2 genes)
bdi
Brachypodium distachyon (2 genes)
cpa
Carica papaya (2 genes)
cre
Chlamydomonas reinhardtii (1 gene)
fve
Fragaria vesca (2 genes)
gma
Glycine max (5 genes)
mdo
Malus domestica (7 genes)
mes
Manihot esculenta (3 genes)
mrcc299
Micromonas sp. RCC299 (1 gene)
mtr
Medicago truncatula (2 genes)
olu
Ostreococcus lucimarinus (2 genes)
osa
Oryza sativa ssp. japonica (3 genes)
osaindica
Oryza sativa ssp. indica (3 genes)
ota
Ostreococcus tauri (1 gene)
ppa
Physcomitrella patens (3 genes)
ptr
Populus trichocarpa (4 genes)
rco
Ricinus communis (2 genes)
sbi
Sorghum bicolor (2 genes)
smo
Selaginella moellendorffii (2 genes)
tca
Theobroma cacao (2 genes)
vca
Volvox carteri (1 gene)
vvi
Vitis vinifera (2 genes)
zma
Zea mays (2 genes)



The gene family HOM002120 has 59 genes in 24 species (3 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
This page uses the Flash plugin.




Index of genes with 1 constraints:

Page 1 of 3, showing 20 records out of 59 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL5G26790 aly name=fgenesh2_kg.5__2084__AT3G56510.2;pid=486092;prot=eq;tid=486092 - scaffold_5 No
AL7G04910 aly name=Al_scaffold_0007_459;pid=856960;prot=eq;tid=888473 - scaffold_7 No
AL7G04930 aly name=scaffold_700522.1;pid=912780;prot=eq;tid=944293 - scaffold_7 No
AT3G56510 ath RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: TATA-binding protein binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504); Has 528 Blast hits to 522 proteins in 214 species: Archae - 0; Bacteria - 2; Metazoa - 211; Fungi - 183; Plants - 47; Viruses - 0; Other Eukaryotes - 85 (source: NCBI BLink).;RNA-binding (RRM/RBD/RNP motifs) family protein transcript=eq;prot=eq; - 3 No
AT4G35850 ath Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT2G02150.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).;Pentatricopeptide repeat (PPR) superfamily protein transcript=eq;prot=eq; + 4 No
BD1G18680 bdi RRM domain containing protein similar to RNA recognition motif containing protein, [Oryza sativa] LOC_Os07g46760 pid=Bradi1g18680.1;tid=Bradi1g18680.1;GeneName=Bradi1g18680;transcript=eq;prot=eq - Bd1 No
BD2G36217 bdi pid=Bradi2g36217.1;tid=Bradi2g36217.1;GeneName=Bradi2g36217;transcript=eq;prot=eq + Bd2 No
CP00130G00670 cpa name=evm.TU.supercontig_130.67;pid=evm.TU.supercontig_130.67;prot=eq;transcript=eq - supercontig_130 No
CP00130G00680 cpa name=evm.TU.supercontig_130.68;pid=evm.TU.supercontig_130.68;prot=eq;transcript=eq - supercontig_130 No
CR06G03280 cre name=e_gwW.3.596.1;pid=112316;prot=eq;tid=112316;transcript=eq + chromosome_6 No
FV0G40190 fve Pentatricopeptide repeat-containing protein At4g35850, mitochondrial, Precursor (putative) transcript=eq;prot=eq;pid=gene27973 + scf0513124 No
FV0G40210 fve Activator of basal transcription 1 (probable) transcript=eq;prot=eq;pid=gene27975 + scf0513124 No
GM05G24130 gma 05 pid=16259443;transcript=eq;prot=eq;name=Glyma05g24130.1 - Gm05 No
GM05G24150 gma 05 pid=16259445;transcript=eq;prot=eq;name=Glyma05g24150.1 - Gm05 No
GM05G24190 gma 05 pid=16259447;transcript=eq;prot=eq;name=Glyma05g24190.1 - Gm05 No
GM19G07210 gma 19 pid=16312140;transcript=eq;prot=eq;name=Glyma19g07210.1 + Gm19 No
GM19G07220 gma 19 pid=16312141;transcript=eq;prot=eq;name=Glyma19g07220.1 + Gm19 No
MD00G179600 mdo transcript=eq;prot=eq;pid=MDP0000249742;tid=MDP0000249742;contig=MDC007695.206 + MDC007695.206 No
MD00G196140 mdo transcript=eq;prot=eq;pid=MDP0000145016;tid=MDP0000145016;contig=MDC008422.387 + MDC008422.387 No
MD00G270210 mdo transcript=eq;prot=eq;pid=MDP0000250257;tid=MDP0000250257;contig=MDC011581.440 - MDC011581.440 No
<< previous
1 | 2 | 3 next >>

Download genes

Include following columns
gene_id
species
description
comment
strand
chr
outlier