Gene family 
- Id
- HOM002116
- Method
- BLASTP E_value=1e-05 MCL_I=2
- Sequences
- Sub-families
-
ORTHO004523 (27 genes in 19 species)
ORTHO014917 (11 genes in 9 species)
ORTHO017612 (7 genes in 6 species)
View all sub-families (6)
- Keywords
-
Overview of gene family content
- aly
- Arabidopsis lyrata (2 genes)
- ath
- Arabidopsis thaliana (2 genes)
- bdi
- Brachypodium distachyon (3 genes)
- cpa
- Carica papaya (2 genes)
- cre
- Chlamydomonas reinhardtii (1 gene)
- fve
- Fragaria vesca (2 genes)
- gma
- Glycine max (6 genes)
- lja
- Lotus japonicus (2 genes)
- mdo
- Malus domestica (5 genes)
- mes
- Manihot esculenta (2 genes)
- mrcc299
- Micromonas sp. RCC299 (1 gene)
- mtr
- Medicago truncatula (1 gene)
- osa
- Oryza sativa ssp. japonica (3 genes)
- osaindica
- Oryza sativa ssp. indica (3 genes)
- ppa
- Physcomitrella patens (3 genes)
- ptr
- Populus trichocarpa (5 genes)
- rco
- Ricinus communis (3 genes)
- sbi
- Sorghum bicolor (3 genes)
- smo
- Selaginella moellendorffii (1 gene)
- tca
- Theobroma cacao (1 gene)
- vvi
- Vitis vinifera (2 genes)
- zma
- Zea mays (6 genes)
The gene family HOM002116 has 59 genes in 22 species (2 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:
- gene family : HOM002116
Page 1 of 3, showing 20 records out of 59 total, starting on record 1, ending on 20
| gene_id | species | description | comment | strand | chr | outlier |
|---|---|---|---|---|---|---|
| AL6G07940 | aly | name=fgenesh2_kg.6__790__AT5G08200.1;pid=487656;prot=eq;tid=487656 | + | scaffold_6 | No | |
| AL6G22880 | aly | name=fgenesh2_kg.6__2304__AT5G23130.1;pid=489170;prot=eq;tid=489170 | + | scaffold_6 | No | |
| AT5G08200 | ath | peptidoglycan-binding LysM domain-containing protein; BEST Arabidopsis thaliana protein match is: Peptidoglycan-binding LysM domain-containing protein (TAIR:AT5G23130.1); Has 390 Blast hits to 387 proteins in 72 species: Archae - 0; Bacteria - 10; Metazoa - 233; Fungi - 7; Plants - 113; Viruses - 0; Other Eukaryotes - 27 (source: NCBI BLink).;peptidoglycan-binding LysM domain-containing protein | transcript=eq;prot=eq; | + | 5 | No |
| AT5G23130 | ath | Peptidoglycan-binding LysM domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: cell wall macromolecule catabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Peptidoglycan-binding lysin domain (InterPro:IPR018392), Peptidoglycan-binding Lysin subgroup (InterPro:IPR002482); BEST Arabidopsis thaliana protein match is: peptidoglycan-binding LysM domain-containing protein (TAIR:AT5G08200.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).;Peptidoglycan-binding LysM domain-containing protein | transcript=eq;prot=eq; | + | 5 | No |
| BD1G29480 | bdi | pid=Bradi1g29480.1;tid=Bradi1g29480.1;GeneName=Bradi1g29480;transcript=eq;prot=eq | - | Bd1 | No | |
| BD1G77920 | bdi | pid=Bradi1g77920.2;tid=Bradi1g77920.2;GeneName=Bradi1g77920;transcript=eq;prot=eq | + | Bd1 | No | |
| BD3G29280 | bdi | pid=Bradi3g29280.1;tid=Bradi3g29280.1;GeneName=Bradi3g29280;transcript=eq;prot=eq | + | Bd3 | No | |
| CP00000G01310 | cpa | name=evm.TU.supercontig_0.131;pid=evm.TU.supercontig_0.131;prot=eq;transcript=eq | - | supercontig_0 | No | |
| CP00467G00020 | cpa | name=evm.TU.supercontig_467.2;pid=evm.TU.supercontig_467.2;prot=eq;transcript=eq | - | supercontig_467 | No | |
| CR07G05740 | cre | name=pasa_Sanger_mRNA30492;pid=392274;prot=eq;tid=420997;transcript=eq | - | chromosome_7 | Yes | |
| FV4G23450 | fve | LysM and putative peptidoglycan-binding domain-containing protein 4 (probable) | transcript=eq;prot=eq;pid=gene00809 | + | LG4 | No |
| FV5G15520 | fve | LysM and putative peptidoglycan-binding domain-containing protein 1 (probable) | transcript=eq;prot=eq;pid=gene09175 | - | LG5 | No |
| GM09G29480 | gma | 09 | pid=16276617;transcript=eq;prot=eq;name=Glyma09g29480.1 | - | Gm09 | No |
| GM09G41910 | gma | 09 | pid=16278035;transcript=eq;prot=eq;name=Glyma09g41910.1 | + | Gm09 | No |
| GM11G10690 | gma | 11 | pid=16283395;transcript=eq;prot=eq;name=Glyma11g10690.1 | - | Gm11 | No |
| GM12G02990 | gma | 12 | pid=16286183;transcript=eq;prot=eq;name=Glyma12g02990.1 | - | Gm12 | No |
| GM16G33890 | gma | 16 | pid=16303788;transcript=eq;prot=eq;name=Glyma16g33890.1 | - | Gm16 | No |
| GM20G00530 | gma | 20 | pid=16315068;transcript=eq;prot=eq;name=Glyma20g00530.1 | - | Gm20 | No |
| LJ2G000550 | lja | partial;prot=eq;transcript=eq;scaffold=CM0237;name=chr2.CM0237.40.nd | - | chr2 | No | |
| LJ3G034990 | lja | partial;prot=eq;transcript=eq;scaffold=CM0135;name=chr3.CM0135.270.nd | - | chr3 | No |