Gene family  

Sub-families
ORTHO004523 (27 genes in 19 species)
ORTHO014917 (11 genes in 9 species)
ORTHO017612 (7 genes in 6 species)
View all sub-families (6)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (2 genes)
ath
Arabidopsis thaliana (2 genes)
bdi
Brachypodium distachyon (3 genes)
cpa
Carica papaya (2 genes)
cre
Chlamydomonas reinhardtii (1 gene)
fve
Fragaria vesca (2 genes)
gma
Glycine max (6 genes)
lja
Lotus japonicus (2 genes)
mdo
Malus domestica (5 genes)
mes
Manihot esculenta (2 genes)
mrcc299
Micromonas sp. RCC299 (1 gene)
mtr
Medicago truncatula (1 gene)
osa
Oryza sativa ssp. japonica (3 genes)
osaindica
Oryza sativa ssp. indica (3 genes)
ppa
Physcomitrella patens (3 genes)
ptr
Populus trichocarpa (5 genes)
rco
Ricinus communis (3 genes)
sbi
Sorghum bicolor (3 genes)
smo
Selaginella moellendorffii (1 gene)
tca
Theobroma cacao (1 gene)
vvi
Vitis vinifera (2 genes)
zma
Zea mays (6 genes)



The gene family HOM002116 has 59 genes in 22 species (2 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
This page uses the Flash plugin.




Index of genes with 1 constraints:

Page 1 of 3, showing 20 records out of 59 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL6G07940 aly name=fgenesh2_kg.6__790__AT5G08200.1;pid=487656;prot=eq;tid=487656 + scaffold_6 No
AL6G22880 aly name=fgenesh2_kg.6__2304__AT5G23130.1;pid=489170;prot=eq;tid=489170 + scaffold_6 No
AT5G08200 ath peptidoglycan-binding LysM domain-containing protein; BEST Arabidopsis thaliana protein match is: Peptidoglycan-binding LysM domain-containing protein (TAIR:AT5G23130.1); Has 390 Blast hits to 387 proteins in 72 species: Archae - 0; Bacteria - 10; Metazoa - 233; Fungi - 7; Plants - 113; Viruses - 0; Other Eukaryotes - 27 (source: NCBI BLink).;peptidoglycan-binding LysM domain-containing protein transcript=eq;prot=eq; + 5 No
AT5G23130 ath Peptidoglycan-binding LysM domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: cell wall macromolecule catabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Peptidoglycan-binding lysin domain (InterPro:IPR018392), Peptidoglycan-binding Lysin subgroup (InterPro:IPR002482); BEST Arabidopsis thaliana protein match is: peptidoglycan-binding LysM domain-containing protein (TAIR:AT5G08200.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).;Peptidoglycan-binding LysM domain-containing protein transcript=eq;prot=eq; + 5 No
BD1G29480 bdi pid=Bradi1g29480.1;tid=Bradi1g29480.1;GeneName=Bradi1g29480;transcript=eq;prot=eq - Bd1 No
BD1G77920 bdi pid=Bradi1g77920.2;tid=Bradi1g77920.2;GeneName=Bradi1g77920;transcript=eq;prot=eq + Bd1 No
BD3G29280 bdi pid=Bradi3g29280.1;tid=Bradi3g29280.1;GeneName=Bradi3g29280;transcript=eq;prot=eq + Bd3 No
CP00000G01310 cpa name=evm.TU.supercontig_0.131;pid=evm.TU.supercontig_0.131;prot=eq;transcript=eq - supercontig_0 No
CP00467G00020 cpa name=evm.TU.supercontig_467.2;pid=evm.TU.supercontig_467.2;prot=eq;transcript=eq - supercontig_467 No
CR07G05740 cre name=pasa_Sanger_mRNA30492;pid=392274;prot=eq;tid=420997;transcript=eq - chromosome_7 Yes
FV4G23450 fve LysM and putative peptidoglycan-binding domain-containing protein 4 (probable) transcript=eq;prot=eq;pid=gene00809 + LG4 No
FV5G15520 fve LysM and putative peptidoglycan-binding domain-containing protein 1 (probable) transcript=eq;prot=eq;pid=gene09175 - LG5 No
GM09G29480 gma 09 pid=16276617;transcript=eq;prot=eq;name=Glyma09g29480.1 - Gm09 No
GM09G41910 gma 09 pid=16278035;transcript=eq;prot=eq;name=Glyma09g41910.1 + Gm09 No
GM11G10690 gma 11 pid=16283395;transcript=eq;prot=eq;name=Glyma11g10690.1 - Gm11 No
GM12G02990 gma 12 pid=16286183;transcript=eq;prot=eq;name=Glyma12g02990.1 - Gm12 No
GM16G33890 gma 16 pid=16303788;transcript=eq;prot=eq;name=Glyma16g33890.1 - Gm16 No
GM20G00530 gma 20 pid=16315068;transcript=eq;prot=eq;name=Glyma20g00530.1 - Gm20 No
LJ2G000550 lja partial;prot=eq;transcript=eq;scaffold=CM0237;name=chr2.CM0237.40.nd - chr2 No
LJ3G034990 lja partial;prot=eq;transcript=eq;scaffold=CM0135;name=chr3.CM0135.270.nd - chr3 No
<< previous
1 | 2 | 3 next >>

Download genes

Include following columns
gene_id
species
description
comment
strand
chr
outlier