Gene family  

Sub-families
ORTHO008544 (21 genes in 17 species)
ORTHO010800 (18 genes in 15 species)
ORTHO023394 (5 genes in 5 species)
View all sub-families (6)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (2 genes)
ath
Arabidopsis thaliana (2 genes)
bdi
Brachypodium distachyon (3 genes)
cpa
Carica papaya (2 genes)
fve
Fragaria vesca (3 genes)
gma
Glycine max (4 genes)
lja
Lotus japonicus (3 genes)
mdo
Malus domestica (2 genes)
mes
Manihot esculenta (4 genes)
mtr
Medicago truncatula (4 genes)
osa
Oryza sativa ssp. japonica (3 genes)
osaindica
Oryza sativa ssp. indica (4 genes)
ppa
Physcomitrella patens (1 gene)
ptr
Populus trichocarpa (5 genes)
rco
Ricinus communis (3 genes)
sbi
Sorghum bicolor (3 genes)
smo
Selaginella moellendorffii (1 gene)
tca
Theobroma cacao (3 genes)
vvi
Vitis vinifera (2 genes)
zma
Zea mays (6 genes)



The gene family HOM002097 has 60 genes in 20 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 3, showing 20 records out of 60 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL3G20350 aly name=Al_scaffold_0003_1980;pid=873339;prot=eq;tid=904852 - scaffold_3 No
AL5G18790 aly name=fgenesh2_kg.5__1308__AT3G49590.1;pid=485316;prot=eq;tid=485316 + scaffold_5 No
AT3G18770 ath Autophagy-related protein 13; LOCATED IN: chloroplast; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Autophagy-related protein 13 (InterPro:IPR018731); BEST Arabidopsis thaliana protein match is: Autophagy-related protein 13 (TAIR:AT3G49590.1); Has 480 Blast hits to 395 proteins in 141 species: Archae - 0; Bacteria - 18; Metazoa - 72; Fungi - 154; Plants - 106; Viruses - 7; Other Eukaryotes - 123 (source: NCBI BLink).;Autophagy-related protein 13 transcript=eq;prot=eq; - 3 No
AT3G49590 ath Autophagy-related protein 13; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Autophagy-related protein 13 (InterPro:IPR018731); BEST Arabidopsis thaliana protein match is: Autophagy-related protein 13 (TAIR:AT3G18770.1).;Autophagy-related protein 13 transcript=eq;prot=eq; + 3 No
BD3G50130 bdi nuclear hormone receptor binding (Blast2GO) pid=Bradi3g50130.1;tid=Bradi3g50130.1;GeneName=Bradi3g50130;transcript=eq;prot=eq - Bd3 No
BD4G24767 bdi pid=Bradi4g24767.1;tid=Bradi4g24767.1;GeneName=Bradi4g24767;transcript=eq;prot=eq + Bd4 No
BD5G17000 bdi nuclear hormone receptor binding (Blast2GO) pid=Bradi5g17000.1;tid=Bradi5g17000.1;GeneName=Bradi5g17000;transcript=eq;prot=eq - Bd5 No
CP00003G01930 cpa name=evm.TU.supercontig_3.193;pid=evm.TU.supercontig_3.193;prot=eq;transcript=eq + supercontig_3 No
CP00042G00990 cpa name=evm.TU.supercontig_42.99;pid=evm.TU.supercontig_42.99;prot=eq;transcript=eq + supercontig_42 No
FV7G03720 fve Autophagy-related protein 13 (probable) transcript=eq;prot=eq;pid=gene18563 - LG7 No
FV7G34130 fve Serine/threonine-protein kinase 36 (similar to) transcript=eq;prot=eq;pid=gene12607 - LG7 No
FV7G34430 fve Autophagy-related protein 13 (probable) transcript=eq;prot=eq;pid=gene12415 - LG7 No
GM02G38530 gma 02 pid=16249474;transcript=eq;prot=eq;name=Glyma02g38530.1 - Gm02 No
GM05G32250 gma 05 pid=16260401;transcript=eq;prot=eq;name=Glyma05g32250.1 + Gm05 No
GM08G15500 gma 08 pid=16271274;transcript=eq;prot=eq;name=Glyma08g15500.1 + Gm08 No
GM14G36550 gma 14 pid=16296620;transcript=eq;prot=eq;name=Glyma14g36550.1 + Gm14 No
LJ0G078870 lja partial;prot=eq;transcript=eq;scaffold=LjSGA_026422;name=LjSGA_026422.1 + LjSGA_026422 No
LJ2G030560 lja prot=eq;transcript=eq;scaffold=CM0360;name=chr2.CM0360.250.nd - chr2 No
LJ4G029390 lja prot=eq;transcript=eq;scaffold=CM0680;name=chr4.CM0680.90.nc - chr4 No
MD00G454450 mdo transcript=eq;prot=eq;pid=MDP0000218357;tid=MDP0000218357;contig=MDC020975.165 + MDC020975.165 No
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