Gene family  

Sub-families
ORTHO001159 (41 genes in 24 species)
ORTHO024645 (5 genes in 1 species)
ORTHO052093 (2 genes in 1 species)
View all sub-families (6)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (2 genes)
ath
Arabidopsis thaliana (2 genes)
bdi
Brachypodium distachyon (2 genes)
cpa
Carica papaya (2 genes)
cre
Chlamydomonas reinhardtii (1 gene)
fve
Fragaria vesca (4 genes)
gma
Glycine max (4 genes)
lja
Lotus japonicus (2 genes)
mdo
Malus domestica (10 genes)
mes
Manihot esculenta (2 genes)
mrcc299
Micromonas sp. RCC299 (1 gene)
mtr
Medicago truncatula (5 genes)
olu
Ostreococcus lucimarinus (1 gene)
osa
Oryza sativa ssp. japonica (2 genes)
osaindica
Oryza sativa ssp. indica (2 genes)
ota
Ostreococcus tauri (1 gene)
ppa
Physcomitrella patens (5 genes)
ptr
Populus trichocarpa (3 genes)
rco
Ricinus communis (2 genes)
smo
Selaginella moellendorffii (1 gene)
tca
Theobroma cacao (1 gene)
vca
Volvox carteri (1 gene)
vvi
Vitis vinifera (2 genes)
zma
Zea mays (2 genes)



The gene family HOM002087 has 60 genes in 24 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 3, showing 20 records out of 60 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL3G12370 aly name=fgenesh2_kg.3__1244__AT3G11940.2;pid=478543;prot=eq;tid=478543 - scaffold_3 No
AL4G22940 aly name=fgenesh2_kg.4__1779__AT2G37270.2;pid=482719;prot=eq;tid=482719 - scaffold_4 No
AT2G37270 ath One of two genes encoding the ribosomal protein S5. Expressed at a lower level compared to ATRPS5A.;ribosomal protein 5B transcript=eq;prot=eq; - 2 No
AT3G11940 ath One of two genes encoding the ribosomal protein S5. Mutants have semi-dominant developmental phenotypes. Most cell-division processes are delayed or disturbed in the heterozygous mutant, and development is completely arrested at an early embryonic stage in the homozygous mutant.;ribosomal protein 5A transcript=eq;prot=eq; - 3 No
BD2G03760 bdi pid=Bradi2g03760.1;tid=Bradi2g03760.1;GeneName=Bradi2g03760;transcript=eq;prot=eq - Bd2 No
BD4G41050 bdi pid=Bradi4g41050.1;tid=Bradi4g41050.1;GeneName=Bradi4g41050;transcript=eq;prot=eq - Bd4 No
CP00085G00100 cpa name=evm.TU.supercontig_85.10;pid=evm.TU.supercontig_85.10;prot=eq;transcript=eq - supercontig_85 No
CP00103G00700 cpa name=evm.TU.supercontig_103.70;pid=evm.TU.supercontig_103.70;prot=eq;transcript=eq + supercontig_103 No
CR06G08880 cre name=estExt_fgenesh2_pg.C_260242;pid=191776;prot=eq;tid=191776;transcript=eq + chromosome_6 No
FV2G28910 fve 40S ribosomal protein S5-2 transcript=eq;prot=eq;pid=gene11132 - LG2 No
FV3G29730 fve 40S ribosomal protein S5 (similar to) transcript=eq;prot=eq;pid=gene25286 + LG3 No
FV4G02090 fve 40S ribosomal protein S5-1 (similar to) transcript=eq;prot=eq;pid=gene29842 - LG4 No
FV6G27950 fve 40S ribosomal protein S5-1 (putative) transcript=eq;prot=eq;pid=gene18014 - LG6 No
GM02G26840 gma 02 pid=16248644;transcript=eq;prot=eq;name=Glyma02g26840.1 + Gm02 No
GM09G15680 gma 09 pid=16275700;transcript=eq;prot=eq;name=Glyma09g15680.1 - Gm09 No
GM12G32850 gma 12 pid=16288690;transcript=eq;prot=eq;name=Glyma12g32850.1 - Gm12 No
GM13G37610 gma 13 pid=16292955;transcript=eq;prot=eq;name=Glyma13g37610.1 + Gm13 No
LJ0G027900 lja partial;prot=eq;transcript=eq;scaffold=LjSGA_013603;name=LjSGA_013603.1 + LjSGA_013603 No
LJ1G052180 lja partial;prot=eq;transcript=eq;scaffold=CM0029;name=chr1.CM0029.350.nd - chr1 No
MD00G189300 mdo transcript=eq;prot=eq;pid=MDP0000695455;tid=MDP0000695455;contig=MDC008128.314 - MDC008128.314 No
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