Gene family  

Sub-families
ORTHO001687 (36 genes in 25 species)
ORTHO041420 (2 genes in 2 species)
ORTHO045675 (2 genes in 2 species)
View all sub-families (9)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (8 genes)
ath
Arabidopsis thaliana (9 genes)
bdi
Brachypodium distachyon (1 gene)
cpa
Carica papaya (1 gene)
cre
Chlamydomonas reinhardtii (1 gene)
fve
Fragaria vesca (1 gene)
gma
Glycine max (3 genes)
lja
Lotus japonicus (1 gene)
mdo
Malus domestica (5 genes)
mes
Manihot esculenta (2 genes)
mrcc299
Micromonas sp. RCC299 (1 gene)
mtr
Medicago truncatula (2 genes)
olu
Ostreococcus lucimarinus (1 gene)
osa
Oryza sativa ssp. japonica (2 genes)
osaindica
Oryza sativa ssp. indica (5 genes)
ota
Ostreococcus tauri (1 gene)
ppa
Physcomitrella patens (3 genes)
ptr
Populus trichocarpa (2 genes)
rco
Ricinus communis (1 gene)
sbi
Sorghum bicolor (5 genes)
smo
Selaginella moellendorffii (1 gene)
tca
Theobroma cacao (1 gene)
vca
Volvox carteri (1 gene)
vvi
Vitis vinifera (1 gene)
zma
Zea mays (1 gene)



The gene family HOM002085 has 60 genes in 25 species (2 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 3, showing 20 records out of 60 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL0G10020 aly name=scaffold_68200001.1;pid=920886;prot=eq;tid=952399 - scaffold_682 No
AL3G36620 aly name=fgenesh2_kg.3__3216__AT2G19570.1;pid=480515;prot=eq;tid=480515 + scaffold_3 No
AL7G12070 aly name=scaffold_701277.1;pid=913535;prot=eq;tid=945048 - scaffold_7 No
AL7G12090 aly name=fgenesh2_kg.7__1231__AT4G29650.1;pid=491798;prot=eq;tid=491798 - scaffold_7 No
AL7G12100 aly name=scaffold_701280.1;pid=913538;prot=eq;tid=945051 - scaffold_7 No
AL7G12110 aly name=fgenesh2_kg.7__1232__AT4G29620.1;pid=491799;prot=eq;tid=491799 - scaffold_7 No
AL7G12120 aly name=fgenesh2_kg.7__1233__AT4G29600.1;pid=491800;prot=eq;tid=491800 - scaffold_7 No
AL7G12150 aly name=fgenesh1_pm.C_scaffold_7000980;pid=328753;prot=eq;tid=328753 - scaffold_7 No
AT2G19570 ath Encodes a cytidine deaminase that deaminates cytidine and deoxycytidine and is competitively inhibited by cytosine-containing compounds.;cytidine deaminase 1 transcript=eq;prot=eq; - 2 No
AT4G29570 ath Cytidine/deoxycytidylate deaminase family protein; FUNCTIONS IN: hydrolase activity, cytidine deaminase activity, catalytic activity, zinc ion binding; INVOLVED IN: cytidine deamination, cytidine metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: stamen; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Cytidine deaminase, homodimeric (InterPro:IPR006263), APOBEC/CMP deaminase, zinc-binding (InterPro:IPR016192), CMP/dCMP deaminase, zinc-binding (InterPro:IPR002125), Cytidine deaminase-like (InterPro:IPR016193), Cytidine/deoxycytidylate deaminase, zinc-binding domain (InterPro:IPR013171); BEST Arabidopsis thaliana protein match is: Cytidine/deoxycytidylate deaminase family protein (TAIR:AT4G29580.2); Has 1057 Blast hits to 1055 proteins in 440 species: Archae - 0; Bacteria - 888; Metazoa - 0; Fungi - 0; Plants - 129; Viruses - 0; Other Eukaryotes - 40 (source: NCBI BLink).;Cytidine/deoxycytidylate deaminase family protein transcript=eq;prot=eq; + 4 No
AT4G29580 ath Cytidine/deoxycytidylate deaminase family protein; FUNCTIONS IN: cytidine deaminase activity, catalytic activity, zinc ion binding; INVOLVED IN: cytidine deamination, cytidine metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell; CONTAINS InterPro DOMAIN/s: Cytidine deaminase, homodimeric (InterPro:IPR006263), Cytidine deaminase-like (InterPro:IPR016193), Cytidine/deoxycytidylate deaminase, zinc-binding domain (InterPro:IPR013171); BEST Arabidopsis thaliana protein match is: Cytidine/deoxycytidylate deaminase family protein (TAIR:AT4G29570.1); Has 1366 Blast hits to 1366 proteins in 563 species: Archae - 0; Bacteria - 1122; Metazoa - 6; Fungi - 0; Plants - 135; Viruses - 0; Other Eukaryotes - 103 (source: NCBI BLink).;Cytidine/deoxycytidylate deaminase family protein transcript=eq;prot=eq; + 4 No
AT4G29600 ath Cytidine/deoxycytidylate deaminase family protein; FUNCTIONS IN: hydrolase activity, cytidine deaminase activity, catalytic activity, zinc ion binding; INVOLVED IN: cytidine deamination, cytidine metabolic process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cytidine deaminase, homodimeric (InterPro:IPR006263), CMP/dCMP deaminase, zinc-binding (InterPro:IPR002125), Cytidine deaminase-like (InterPro:IPR016193), Cytidine/deoxycytidylate deaminase, zinc-binding domain (InterPro:IPR013171); BEST Arabidopsis thaliana protein match is: Cytidine/deoxycytidylate deaminase family protein (TAIR:AT4G29620.1); Has 2822 Blast hits to 2815 proteins in 1241 species: Archae - 50; Bacteria - 2209; Metazoa - 129; Fungi - 52; Plants - 128; Viruses - 0; Other Eukaryotes - 254 (source: NCBI BLink).;Cytidine/deoxycytidylate deaminase family protein transcript=eq;prot=eq; + 4 No
AT4G29610 ath Cytidine/deoxycytidylate deaminase family protein; FUNCTIONS IN: hydrolase activity, cytidine deaminase activity, zinc ion binding, catalytic activity; INVOLVED IN: cytidine deamination, cytidine metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Cytidine deaminase, homodimeric (InterPro:IPR006263), CMP/dCMP deaminase, zinc-binding (InterPro:IPR002125), Cytidine deaminase-like (InterPro:IPR016193), Cytidine/deoxycytidylate deaminase, zinc-binding domain (InterPro:IPR013171); BEST Arabidopsis thaliana protein match is: Cytidine/deoxycytidylate deaminase family protein (TAIR:AT4G29600.1); Has 3306 Blast hits to 3284 proteins in 1430 species: Archae - 58; Bacteria - 2532; Metazoa - 138; Fungi - 102; Plants - 130; Viruses - 0; Other Eukaryotes - 346 (source: NCBI BLink).;Cytidine/deoxycytidylate deaminase family protein transcript=eq;prot=eq; + 4 No
AT4G29620 ath Cytidine/deoxycytidylate deaminase family protein; FUNCTIONS IN: hydrolase activity, cytidine deaminase activity, catalytic activity, zinc ion binding; INVOLVED IN: cytidine deamination, cytidine metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: carpel; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Cytidine deaminase, homodimeric (InterPro:IPR006263), APOBEC/CMP deaminase, zinc-binding (InterPro:IPR016192), CMP/dCMP deaminase, zinc-binding (InterPro:IPR002125), Cytidine deaminase-like (InterPro:IPR016193), Cytidine/deoxycytidylate deaminase, zinc-binding domain (InterPro:IPR013171); BEST Arabidopsis thaliana protein match is: Cytidine/deoxycytidylate deaminase family protein (TAIR:AT4G29600.1); Has 1708 Blast hits to 1703 proteins in 740 species: Archae - 42; Bacteria - 1328; Metazoa - 70; Fungi - 9; Plants - 128; Viruses - 0; Other Eukaryotes - 131 (source: NCBI BLink).;Cytidine/deoxycytidylate deaminase family protein transcript=eq;prot=eq; + 4 No
AT4G29630 ath Cytidine/deoxycytidylate deaminase family protein; FUNCTIONS IN: hydrolase activity, cytidine deaminase activity, catalytic activity, zinc ion binding; INVOLVED IN: cytidine deamination, cytidine metabolic process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cytidine deaminase, homodimeric (InterPro:IPR006263), APOBEC/CMP deaminase, zinc-binding (InterPro:IPR016192), CMP/dCMP deaminase, zinc-binding (InterPro:IPR002125), Cytidine deaminase-like (InterPro:IPR016193), Cytidine/deoxycytidylate deaminase, zinc-binding domain (InterPro:IPR013171); BEST Arabidopsis thaliana protein match is: Cytidine/deoxycytidylate deaminase family protein (TAIR:AT4G29600.1); Has 3200 Blast hits to 3200 proteins in 1316 species: Archae - 54; Bacteria - 2465; Metazoa - 155; Fungi - 71; Plants - 127; Viruses - 0; Other Eukaryotes - 328 (source: NCBI BLink).;Cytidine/deoxycytidylate deaminase family protein transcript=eq;prot=eq; + 4 No
AT4G29640 ath Cytidine/deoxycytidylate deaminase family protein; FUNCTIONS IN: hydrolase activity, cytidine deaminase activity, catalytic activity, zinc ion binding; INVOLVED IN: cytidine deamination, cytidine metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Cytidine deaminase, homodimeric (InterPro:IPR006263), APOBEC/CMP deaminase, zinc-binding (InterPro:IPR016192), CMP/dCMP deaminase, zinc-binding (InterPro:IPR002125), Cytidine deaminase-like (InterPro:IPR016193), Cytidine/deoxycytidylate deaminase, zinc-binding domain (InterPro:IPR013171); BEST Arabidopsis thaliana protein match is: Cytidine/deoxycytidylate deaminase family protein (TAIR:AT4G29610.1); Has 1027 Blast hits to 1027 proteins in 425 species: Archae - 0; Bacteria - 850; Metazoa - 0; Fungi - 0; Plants - 127; Viruses - 0; Other Eukaryotes - 50 (source: NCBI BLink).;Cytidine/deoxycytidylate deaminase family protein transcript=eq;prot=eq; + 4 No
AT4G29650 ath Cytidine/deoxycytidylate deaminase family protein; FUNCTIONS IN: cytidine deaminase activity, catalytic activity, zinc ion binding; INVOLVED IN: pyrimidine salvage, cytidine metabolic process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cytidine deaminase, homodimeric (InterPro:IPR006263), Cytidine deaminase-like (InterPro:IPR016193), Cytidine/deoxycytidylate deaminase, zinc-binding domain (InterPro:IPR013171); BEST Arabidopsis thaliana protein match is: Cytidine/deoxycytidylate deaminase family protein (TAIR:AT4G29610.1); Has 939 Blast hits to 937 proteins in 395 species: Archae - 0; Bacteria - 794; Metazoa - 0; Fungi - 0; Plants - 127; Viruses - 0; Other Eukaryotes - 18 (source: NCBI BLink).;Cytidine/deoxycytidylate deaminase family protein transcript=eq;prot=eq; + 4 No
BD2G48040 bdi zinc ion binding, cytidine deaminase activity (Blast2GO) pid=Bradi2g48040.1;tid=Bradi2g48040.1;GeneName=Bradi2g48040;transcript=eq;prot=eq - Bd2 No
CP31168G00010 cpa name=evm.TU.contig_31168.1;pid=evm.TU.contig_31168.1;prot=eq;transcript=eq - contig_31168 No
CR13G01760 cre name=estExt_gwp_1H.C_20023;pid=127415;prot=eq;tid=127415;transcript=eq - chromosome_13 No
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