Gene family  

Sub-families
ORTHO004054 (28 genes in 22 species)
ORTHO011981 (16 genes in 14 species)
ORTHO021552 (5 genes in 5 species)
View all sub-families (5)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (4 genes)
ath
Arabidopsis thaliana (3 genes)
bdi
Brachypodium distachyon (2 genes)
cpa
Carica papaya (2 genes)
cre
Chlamydomonas reinhardtii (2 genes)
fve
Fragaria vesca (3 genes)
gma
Glycine max (4 genes)
lja
Lotus japonicus (4 genes)
mdo
Malus domestica (2 genes)
mes
Manihot esculenta (3 genes)
mrcc299
Micromonas sp. RCC299 (1 gene)
mtr
Medicago truncatula (1 gene)
olu
Ostreococcus lucimarinus (2 genes)
osa
Oryza sativa ssp. japonica (3 genes)
osaindica
Oryza sativa ssp. indica (3 genes)
ota
Ostreococcus tauri (1 gene)
ppa
Physcomitrella patens (3 genes)
ptr
Populus trichocarpa (2 genes)
rco
Ricinus communis (2 genes)
sbi
Sorghum bicolor (2 genes)
smo
Selaginella moellendorffii (1 gene)
tca
Theobroma cacao (2 genes)
vca
Volvox carteri (2 genes)
vvi
Vitis vinifera (2 genes)
zma
Zea mays (4 genes)



The gene family HOM002081 has 60 genes in 25 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 3, showing 20 records out of 60 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL5G13770 aly name=scaffold_501429.1;pid=905725;prot=eq;tid=937238 + scaffold_5 No
AL7G00330 aly name=fgenesh2_kg.7__41__AT4G38480.1;pid=490608;prot=eq;tid=490608 + scaffold_7 No
AL7G05800 aly name=fgenesh2_kg.7__571__AT4G35140.1;pid=491138;prot=eq;tid=491138 + scaffold_7 No
AL8G00080 aly name=scaffold_800007.1;pid=916607;prot=eq;tid=948120 + scaffold_8 No
AT3G45620 ath This gene is predicted to encode a protein with a DWD motif. It can bind to DDB1a in Y2H assays, and DDB1b in co-IP assays, and may be involved in the formation of a CUL4-based E3 ubiquitin ligase;Transducin/WD40 repeat-like superfamily protein transcript=eq;prot=eq; + 3 No
AT4G35140 ath Transducin/WD40 repeat-like superfamily protein; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT4G38480.1); Has 10094 Blast hits to 7474 proteins in 477 species: Archae - 10; Bacteria - 1944; Metazoa - 3788; Fungi - 2083; Plants - 884; Viruses - 0; Other Eukaryotes - 1385 (source: NCBI BLink).;Transducin/WD40 repeat-like superfamily protein transcript=eq;prot=eq; - 4 No
AT4G38480 ath Transducin/WD40 repeat-like superfamily protein; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT4G35140.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).;Transducin/WD40 repeat-like superfamily protein transcript=eq;prot=eq; + 4 No
BD1G29980 bdi ligand-dependent nuclear receptor transcription coactivator activity (Blast2GO) pid=Bradi1g29980.1;tid=Bradi1g29980.1;GeneName=Bradi1g29980;transcript=eq;prot=eq - Bd1 No
BD3G32380 bdi nucleoside-triphosphatase activity, ligand-dependent nuclear receptor transcription coactivator activity (Blast2GO) pid=Bradi3g32380.1;tid=Bradi3g32380.1;GeneName=Bradi3g32380;transcript=eq;prot=eq + Bd3 No
CP00020G01230 cpa name=evm.TU.supercontig_20.123;pid=evm.TU.supercontig_20.123;prot=eq;transcript=eq - supercontig_20 No
CP00139G00590 cpa name=evm.TU.supercontig_139.59;pid=evm.TU.supercontig_139.59;prot=eq;transcript=eq - supercontig_139 No
CR07G03410 cre name=fgenesh1_pg.C_scaffold_10000331;pid=10159;prot=eq;tid=10159;transcript=eq - chromosome_7 No
CR10G01660 cre name=pasa_Sanger_mRNA4662;pid=421085;prot=eq;tid=394890;transcript=eq - chromosome_10 No
FV0G52570 fve WD repeat-containing protein 42A (probable) transcript=eq;prot=eq;pid=gene32754 + scf0510687 No
FV2G27290 fve WD repeat-containing protein 42A (probable) transcript=eq;prot=eq;pid=gene23749 - LG2 No
FV3G30020 fve WD repeat-containing protein 42A (probable) transcript=eq;prot=eq;pid=gene25341 - LG3 No
GM10G43020 gma 10 pid=16281941;transcript=eq;prot=eq;name=Glyma10g43020.1 - Gm10 No
GM13G40440 gma 13 pid=16293283;transcript=eq;prot=eq;name=Glyma13g40440.1 + Gm13 No
GM15G04960 gma 15 pid=16297674;transcript=eq;prot=eq;name=Glyma15g04960.1 - Gm15 No
GM20G23960 gma 20 pid=16316608;transcript=eq;prot=eq;name=Glyma20g23960.1 + Gm20 No
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