Gene family  

Sub-families
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Keywords


Overview of gene family content




aly
Arabidopsis lyrata (2 genes)
ath
Arabidopsis thaliana (2 genes)
bdi
Brachypodium distachyon (1 gene)
cpa
Carica papaya (2 genes)
fve
Fragaria vesca (3 genes)
gma
Glycine max (6 genes)
lja
Lotus japonicus (4 genes)
mdo
Malus domestica (8 genes)
mes
Manihot esculenta (4 genes)
mrcc299
Micromonas sp. RCC299 (2 genes)
mtr
Medicago truncatula (3 genes)
olu
Ostreococcus lucimarinus (2 genes)
osa
Oryza sativa ssp. japonica (1 gene)
osaindica
Oryza sativa ssp. indica (1 gene)
ota
Ostreococcus tauri (2 genes)
ppa
Physcomitrella patens (2 genes)
ptr
Populus trichocarpa (3 genes)
rco
Ricinus communis (2 genes)
sbi
Sorghum bicolor (2 genes)
smo
Selaginella moellendorffii (1 gene)
tca
Theobroma cacao (2 genes)
vvi
Vitis vinifera (2 genes)
zma
Zea mays (3 genes)



The gene family HOM002079 has 60 genes in 23 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 3, showing 20 records out of 60 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL4G34210 aly name=fgenesh2_kg.4__2828__AT2G46210.1;pid=483768;prot=eq;tid=483768 + scaffold_4 No
AL5G32320 aly name=scaffold_503403.1;pid=907699;prot=eq;tid=939212 + scaffold_5 No
AT2G46210 ath Fatty acid/sphingolipid desaturase; FUNCTIONS IN: oxidoreductase activity, oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water, iron ion binding, heme binding; INVOLVED IN: oxidation reduction, fatty acid biosynthetic process, lipid metabolic process; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Fatty acid desaturase, type 1 (InterPro:IPR005804), Fatty acid/sphingolipid desaturase (InterPro:IPR012171), Cytochrome b5 (InterPro:IPR001199); BEST Arabidopsis thaliana protein match is: Fatty acid/sphingolipid desaturase (TAIR:AT3G61580.1); Has 5941 Blast hits to 5850 proteins in 906 species: Archae - 2; Bacteria - 1188; Metazoa - 1112; Fungi - 1689; Plants - 939; Viruses - 2; Other Eukaryotes - 1009 (source: NCBI BLink).;Fatty acid/sphingolipid desaturase transcript=eq;prot=eq; + 2 No
AT3G61580 ath Fatty acid/sphingolipid desaturase; CONTAINS InterPro DOMAIN/s: Fatty acid desaturase, type 1 (InterPro:IPR005804), Fatty acid/sphingolipid desaturase (InterPro:IPR012171), Cytochrome b5 (InterPro:IPR001199); BEST Arabidopsis thaliana protein match is: Fatty acid/sphingolipid desaturase (TAIR:AT2G46210.1); Has 5416 Blast hits to 5306 proteins in 857 species: Archae - 2; Bacteria - 1062; Metazoa - 955; Fungi - 1609; Plants - 915; Viruses - 2; Other Eukaryotes - 871 (source: NCBI BLink).;Fatty acid/sphingolipid desaturase transcript=eq;prot=eq; + 3 No
BD4G28320 bdi NADPH-hemoprotein reductase activity, L-lactate dehydrogenase (cytochrome) activity, cytochrome-b5 reductase activity (Blast2GO) pid=Bradi4g28320.1;tid=Bradi4g28320.1;GeneName=Bradi4g28320;transcript=eq;prot=eq + Bd4 No
CP00007G01760 cpa name=evm.TU.supercontig_7.176;pid=evm.TU.supercontig_7.176;prot=eq;transcript=eq + supercontig_7 No
CP00011G00520 cpa name=evm.TU.supercontig_11.52;pid=evm.TU.supercontig_11.52;prot=eq;transcript=eq - supercontig_11 No
FV2G32870 fve Fatty acid desaturase 2 (Delta(6) desaturase) (probable) transcript=eq;prot=eq;pid=gene02698 - LG2 No
FV7G06710 fve Fatty acid desaturase 3 (probable) transcript=eq;prot=eq;pid=gene18998 + LG7 No
FV7G06740 fve Fatty acid desaturase 1 (Delta(5) desaturase) (probable) transcript=eq;prot=eq;pid=gene19001 + LG7 No
GM01G05470 gma 01 pid=16243502;transcript=eq;prot=eq;name=Glyma01g05470.1 + Gm01 No
GM02G11820 gma 02 pid=16247774;transcript=eq;prot=eq;name=Glyma02g11820.1 + Gm02 No
GM08G41120 gma 08 pid=16273432;transcript=eq;prot=eq;name=Glyma08g41120.1 + Gm08 No
GM14G10890 gma 14 pid=16295115;transcript=eq;prot=eq;name=Glyma14g10890.1 - Gm14 No
GM17G34640 gma 17 pid=16307048;transcript=eq;prot=eq;name=Glyma17g34640.1 + Gm17 No
GM18G15260 gma 18 pid=16308876;transcript=eq;prot=eq;name=Glyma18g15260.1 - Gm18 No
LJ0G283410 lja partial;prot=eq;transcript=eq;scaffold=LjSGA_096491;name=LjSGA_096491.1.1 - LjSGA_096491 No
LJ0G422650 lja partial;prot=eq;transcript=eq;scaffold=LjT46I09;name=LjT46I09.200.nd - chr0 No
LJ0G467910 lja prot=eq;transcript=eq;scaffold=LjT10I07;name=LjT10I07.190.nd - chr0 No
LJ5G004420 lja prot=eq;transcript=eq;scaffold=CM0019;name=chr5.CM0019.90.nd + chr5 No
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