Gene family  

Sub-families
ORTHO003151 (30 genes in 24 species)
ORTHO008840 (21 genes in 18 species)
ORTHO035305 (3 genes in 2 species)
View all sub-families (3)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (3 genes)
ath
Arabidopsis thaliana (2 genes)
bdi
Brachypodium distachyon (3 genes)
cpa
Carica papaya (2 genes)
cre
Chlamydomonas reinhardtii (1 gene)
fve
Fragaria vesca (3 genes)
gma
Glycine max (3 genes)
lja
Lotus japonicus (3 genes)
mdo
Malus domestica (7 genes)
mes
Manihot esculenta (3 genes)
mrcc299
Micromonas sp. RCC299 (2 genes)
mtr
Medicago truncatula (2 genes)
olu
Ostreococcus lucimarinus (1 gene)
osa
Oryza sativa ssp. japonica (2 genes)
osaindica
Oryza sativa ssp. indica (2 genes)
ota
Ostreococcus tauri (1 gene)
ppa
Physcomitrella patens (3 genes)
ptr
Populus trichocarpa (3 genes)
rco
Ricinus communis (2 genes)
sbi
Sorghum bicolor (3 genes)
smo
Selaginella moellendorffii (1 gene)
tca
Theobroma cacao (2 genes)
vca
Volvox carteri (1 gene)
vvi
Vitis vinifera (2 genes)
zma
Zea mays (3 genes)



The gene family HOM002067 has 60 genes in 25 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 3, showing 20 records out of 60 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL6G23670 aly name=scaffold_602455.1;pid=910398;prot=eq;tid=941911 + scaffold_6 No
AL6G23690 aly name=fgenesh2_kg.6__2380__AT5G23880.1;pid=489246;prot=eq;tid=489246 + scaffold_6 No
AL7G07840 aly name=fgenesh2_kg.7__782__AT4G33410.1;pid=491349;prot=eq;tid=491349 - scaffold_7 No
AT4G33410 ath SIGNAL PEPTIDE PEPTIDASE-LIKE 1 (SPPL1); FUNCTIONS IN: aspartic-type endopeptidase activity; INVOLVED IN: biological_process unknown; LOCATED IN: endosome; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase A22, presenilin signal peptide (InterPro:IPR006639), Peptidase A22B, signal peptide peptidase (InterPro:IPR007369); BEST Arabidopsis thaliana protein match is: SIGNAL PEPTIDE PEPTIDASE-LIKE 3 (TAIR:AT2G43070.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).;SIGNAL PEPTIDE PEPTIDASE-LIKE 1 transcript=eq;prot=eq; + 4 No
AT5G23880 ath Encodes a protein similar to the 100kD subunit of cleavage and polyadenylation specificity factor (CPSF), the factor responsible for the recognition of the AAUAAA motif during mRNA polyadenylation. The protein interacts with a portion of a nuclear poly(A) polymerase. It is likely to be a part of the mRNA 3'end formation apparatus.;cleavage and polyadenylation specificity factor 100 transcript=eq;prot=eq; + 5 No
BD2G00840 bdi endoribonuclease activity (Blast2GO) pid=Bradi2g00840.1;tid=Bradi2g00840.1;GeneName=Bradi2g00840;transcript=eq;prot=eq - Bd2 No
BD3G42950 bdi aspartic endopeptidase activity, intramembrane cleaving (Blast2GO) pid=Bradi3g42950.1;tid=Bradi3g42950.1;GeneName=Bradi3g42950;transcript=eq;prot=eq - Bd3 No
BD4G38660 bdi endoribonuclease activity (Blast2GO) pid=Bradi4g38660.1;tid=Bradi4g38660.1;GeneName=Bradi4g38660;transcript=eq;prot=eq - Bd4 No
CP00107G00640 cpa name=evm.TU.supercontig_107.64;pid=evm.TU.supercontig_107.64;prot=eq;transcript=eq + supercontig_107 No
CP26789G00040 cpa name=evm.TU.contig_26789.4;pid=evm.TU.contig_26789.4;prot=eq;transcript=eq - contig_26789 No
CR12G00930 cre name=OVA_Chlre2_kg.scaffold_11000276;pid=206442;prot=eq;tid=206447;transcript=eq - chromosome_12 No
FV5G12740 fve Cleavage and polyadenylation specificity factor subunit 2 (CPSF 100 kDa subunit) (probable) transcript=eq;prot=eq;pid=gene26064 - LG5 No
FV7G38050 fve Cleavage and polyadenylation specificity factor subunit 2 (CPSF 100 kDa subunit) (similar to) transcript=eq;prot=eq;pid=gene13219 + LG7 No
FV7G38410 fve Cleavage and polyadenylation specificity factor subunit 2 (CPSF 100 kDa subunit) (similar to) transcript=eq;prot=eq;pid=gene13255 - LG7 No
GM10G37870 gma 10 pid=16281339;transcript=eq;prot=eq;name=Glyma10g37870.1 - Gm10 No
GM11G27560 gma 11 pid=16284799;transcript=eq;prot=eq;name=Glyma11g27560.1 - Gm11 No
GM20G29950 gma 20 pid=16317318;transcript=eq;prot=eq;name=Glyma20g29950.1 + Gm20 No
LJ0G046270 lja partial;prot=eq;transcript=eq;scaffold=LjSGA_018089;name=LjSGA_018089.1 - LjSGA_018089 No
LJ2G004050 lja prot=eq;transcript=eq;scaffold=CM0904;name=chr2.CM0904.180.nd + chr2 No
LJ2G004200 lja partial;prot=eq;transcript=eq;scaffold=CM0904;name=chr2.CM0904.330.nd - chr2 No
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