Gene family  

Sub-families
ORTHO006110 (25 genes in 18 species)
ORTHO020251 (6 genes in 4 species)
ORTHO022484 (5 genes in 5 species)
View all sub-families (5)
 
Keywords


Overview of gene family content




ath
Arabidopsis thaliana (1 gene)
bdi
Brachypodium distachyon (3 genes)
cpa
Carica papaya (1 gene)
cre
Chlamydomonas reinhardtii (1 gene)
fve
Fragaria vesca (2 genes)
gma
Glycine max (7 genes)
lja
Lotus japonicus (4 genes)
mdo
Malus domestica (7 genes)
mes
Manihot esculenta (2 genes)
mrcc299
Micromonas sp. RCC299 (2 genes)
osa
Oryza sativa ssp. japonica (6 genes)
osaindica
Oryza sativa ssp. indica (4 genes)
ptr
Populus trichocarpa (2 genes)
rco
Ricinus communis (2 genes)
sbi
Sorghum bicolor (3 genes)
smo
Selaginella moellendorffii (1 gene)
tca
Theobroma cacao (2 genes)
vca
Volvox carteri (1 gene)
vvi
Vitis vinifera (3 genes)
zma
Zea mays (6 genes)



The gene family HOM002060 has 60 genes in 20 species (4 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 3, showing 20 records out of 60 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AT2G28840 ath XB3 ortholog 1 in Arabidopsis thaliana (XBAT31); FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Ankyrin repeat-containing domain (InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: XB3 ortholog 3 in Arabidopsis thaliana (TAIR:AT5G07270.1); Has 52906 Blast hits to 22710 proteins in 954 species: Archae - 64; Bacteria - 3597; Metazoa - 29466; Fungi - 4564; Plants - 3287; Viruses - 345; Other Eukaryotes - 11583 (source: NCBI BLink).;XB3 ortholog 1 in Arabidopsis thaliana transcript=eq;prot=eq; + 2 No
BD1G66640 bdi RING, subfamily ankyrin repeat and RING finger protein, putative pid=Bradi1g66640.1;tid=Bradi1g66640.1;GeneName=Bradi1g66640;transcript=eq;prot=eq + Bd1 No
BD2G37100 bdi RING, subfamily ankyrin repeat domain-containing and RING finger protein, putative pid=Bradi2g37100.1;tid=Bradi2g37100.1;GeneName=Bradi2g37100;transcript=eq;prot=eq - Bd2 No
BD2G62400 bdi RING, subfamily ankyrin repeat domain-containing and RING finger protein, putative pid=Bradi2g62400.1;tid=Bradi2g62400.1;GeneName=Bradi2g62400;transcript=eq;prot=eq + Bd2 No
CP00081G01670 cpa name=evm.TU.supercontig_81.167;pid=evm.TU.supercontig_81.167;prot=eq;transcript=eq - supercontig_81 No
CR05G03640 cre name=Chlre2_kg.scaffold_6000119;pid=142629;prot=eq;tid=142629;transcript=eq - chromosome_5 No
FV0G31070 fve Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit A (Serine/threonine-protein phosphatase 6 regulatory subunit ARS-A) (probable) transcript=eq;prot=eq;pid=gene14115 - scf0513178 No
FV6G13320 fve Ankyrin repeat, PH and SEC7 domain containing protein secG (probable) transcript=eq;prot=eq;pid=gene18385 - LG6 No
GM08G42740 gma 08 pid=16273620;transcript=eq;prot=eq;name=Glyma08g42740.1 + Gm08 No
GM08G47310 gma 08 pid=16274143;transcript=eq;prot=eq;name=Glyma08g47310.1 + Gm08 No
GM11G14900 gma 11 pid=16283930;transcript=eq;prot=eq;name=Glyma11g14900.1 - Gm11 No
GM12G06850 gma 12 pid=16286669;transcript=eq;prot=eq;name=Glyma12g06850.1 - Gm12 No
GM13G41040 gma 13 pid=16293357;transcript=eq;prot=eq;name=Glyma13g41040.1 + Gm13 No
GM15G04410 gma 15 pid=16297608;transcript=eq;prot=eq;name=Glyma15g04410.1 - Gm15 No
GM18G38610 gma 18 pid=16309914;transcript=eq;prot=eq;name=Glyma18g38610.1 + Gm18 No
LJ0G062230 lja prot=eq;transcript=eq;scaffold=LjSGA_022012;name=LjSGA_022012.1 + LjSGA_022012 No
LJ0G076410 lja partial;prot=eq;transcript=eq;scaffold=LjSGA_025778;name=LjSGA_025778.1 - LjSGA_025778 No
LJ0G173470 lja partial;prot=eq;transcript=eq;scaffold=LjSGA_054664;name=LjSGA_054664.1 - LjSGA_054664 No
LJ3G013820 lja partial;prot=eq;transcript=eq;scaffold=LjT21L04;name=chr3.LjT21L04.10.nc - chr3 No
MD00G370850 mdo transcript=eq;prot=eq;pid=MDP0000141896;tid=MDP0000141896;contig=MDC016777.341 - MDC016777.341 No
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