Gene family  

Sub-families
ORTHO005474 (25 genes in 15 species)
ORTHO007124 (23 genes in 14 species)
ORTHO022018 (5 genes in 5 species)
View all sub-families (6)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (5 genes)
ath
Arabidopsis thaliana (4 genes)
bdi
Brachypodium distachyon (2 genes)
cpa
Carica papaya (2 genes)
fve
Fragaria vesca (2 genes)
gma
Glycine max (10 genes)
lja
Lotus japonicus (2 genes)
mdo
Malus domestica (6 genes)
mes
Manihot esculenta (4 genes)
mtr
Medicago truncatula (2 genes)
osa
Oryza sativa ssp. japonica (3 genes)
osaindica
Oryza sativa ssp. indica (3 genes)
ptr
Populus trichocarpa (4 genes)
rco
Ricinus communis (2 genes)
sbi
Sorghum bicolor (3 genes)
tca
Theobroma cacao (2 genes)
zma
Zea mays (5 genes)



The gene family HOM002057 has 61 genes in 17 species (2 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 4, showing 20 records out of 61 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL1G08930 aly name=fgenesh2_kg.1__968__AT1G09250.1;pid=471014;prot=eq;tid=471014 + scaffold_1 No
AL3G05780 aly name=fgenesh2_kg.3__575__AT3G05800.1;pid=477874;prot=eq;tid=477874 + scaffold_3 No
AL3G06830 aly name=fgenesh2_kg.3__667__AT3G06590.1;pid=477966;prot=eq;tid=477966 - scaffold_3 No
AL3G18370 aly name=fgenesh2_kg.3__1880__AT3G17100.2;pid=479179;prot=eq;tid=479179 + scaffold_3 No
AL7G27220 aly name=scaffold_702890.1;pid=915148;prot=eq;tid=946661 - scaffold_7 No
AT1G09250 ath basic helix-loop-helix (bHLH) DNA-binding superfamily protein; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: sequence-specific DNA binding transcription factors (TAIR:AT3G17100.2); Has 250 Blast hits to 250 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 250; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).;basic helix-loop-helix (bHLH) DNA-binding superfamily protein transcript=eq;prot=eq; + 1 No
AT3G05800 ath AtBS1(activation-tagged BRI1 suppressor 1)-interacting factor 1 (AIF1); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT1G09250.1); Has 150 Blast hits to 150 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 150; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).;AtBS1(activation-tagged BRI1 suppressor 1)-interacting factor 1 transcript=eq;prot=eq; + 3 No
AT3G06590 ath basic helix-loop-helix (bHLH) DNA-binding superfamily protein; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: sequence-specific DNA binding transcription factors (TAIR:AT3G17100.2); Has 284 Blast hits to 282 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 282; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).;basic helix-loop-helix (bHLH) DNA-binding superfamily protein transcript=eq;prot=eq; - 3 No
AT3G17100 ath sequence-specific DNA binding transcription factors; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT3G06590.2); Has 168 Blast hits to 168 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 166; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).;sequence-specific DNA binding transcription factors transcript=eq;prot=eq; + 3 No
BD1G64260 bdi pid=Bradi1g64260.1;tid=Bradi1g64260.1;GeneName=Bradi1g64260;transcript=eq;prot=eq - Bd1 No
BD2G08540 bdi pid=Bradi2g08540.1;tid=Bradi2g08540.1;GeneName=Bradi2g08540;transcript=eq;prot=eq - Bd2 No
CP00009G00400 cpa name=evm.TU.supercontig_9.40;pid=evm.TU.supercontig_9.40;prot=eq;transcript=eq + supercontig_9 No
CP00048G01710 cpa name=evm.TU.supercontig_48.171;pid=evm.TU.supercontig_48.171;prot=eq;transcript=eq + supercontig_48 No
FV3G38750 fve Transcription factor bHLH148 (bHLH 148) (probable) transcript=eq;prot=eq;pid=gene05064 + LG3 No
FV6G02720 fve Transcription factor bHLH147 (bHLH 147) (probable) transcript=eq;prot=eq;pid=gene00142 + LG6 No
GM03G39010 gma 03 pid=16253837;transcript=eq;prot=eq;name=Glyma03g39010.1 - Gm03 No
GM07G36670 gma 07 pid=16268949;transcript=eq;prot=eq;name=Glyma07g36670.1 - Gm07 No
GM09G03920 gma 09 pid=16274702;transcript=eq;prot=eq;name=Glyma09g03920.1 - Gm09 No
GM10G28740 gma 10 pid=16280258;transcript=eq;prot=eq;name=Glyma10g28740.1 - Gm10 No
GM12G17160 gma 12 pid=16287739;transcript=eq;prot=eq;name=Glyma12g17160.1 + Gm12 No
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