Gene family  

Sub-families
ORTHO000608 (52 genes in 25 species)
ORTHO063865 (2 genes in 2 species)
View all sub-families (2)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (2 genes)
ath
Arabidopsis thaliana (2 genes)
bdi
Brachypodium distachyon (3 genes)
cpa
Carica papaya (2 genes)
cre
Chlamydomonas reinhardtii (1 gene)
fve
Fragaria vesca (1 gene)
gma
Glycine max (4 genes)
lja
Lotus japonicus (2 genes)
mdo
Malus domestica (3 genes)
mes
Manihot esculenta (4 genes)
mrcc299
Micromonas sp. RCC299 (1 gene)
mtr
Medicago truncatula (2 genes)
olu
Ostreococcus lucimarinus (2 genes)
osa
Oryza sativa ssp. japonica (5 genes)
osaindica
Oryza sativa ssp. indica (3 genes)
ota
Ostreococcus tauri (1 gene)
ppa
Physcomitrella patens (4 genes)
ptr
Populus trichocarpa (4 genes)
rco
Ricinus communis (2 genes)
sbi
Sorghum bicolor (3 genes)
smo
Selaginella moellendorffii (1 gene)
tca
Theobroma cacao (2 genes)
vca
Volvox carteri (1 gene)
vvi
Vitis vinifera (1 gene)
zma
Zea mays (5 genes)



The gene family HOM002050 has 61 genes in 25 species (2 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
This page uses the Flash plugin.




Index of genes with 1 constraints:

Page 1 of 4, showing 20 records out of 61 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL1G18830 aly name=fgenesh1_pm.C_scaffold_1001532;pid=312752;prot=eq;tid=312752 - scaffold_1 No
AL2G22070 aly name=fgenesh1_pg.C_scaffold_2001628;pid=339529;prot=eq;tid=339529 - scaffold_2 No
AT1G17880 ath basic transcription factor 3 (BTF3); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: response to salt stress; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Nascent polypeptide-associated complex NAC (InterPro:IPR002715); BEST Arabidopsis thaliana protein match is: Nascent polypeptide-associated complex NAC (TAIR:AT1G73230.1); Has 841 Blast hits to 841 proteins in 250 species: Archae - 0; Bacteria - 0; Metazoa - 427; Fungi - 178; Plants - 145; Viruses - 0; Other Eukaryotes - 91 (source: NCBI BLink).;basic transcription factor 3 transcript=eq;prot=eq; - 1 No
AT1G73230 ath Nascent polypeptide-associated complex NAC; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to salt stress; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Nascent polypeptide-associated complex NAC (InterPro:IPR002715); BEST Arabidopsis thaliana protein match is: basic transcription factor 3 (TAIR:AT1G17880.1); Has 832 Blast hits to 832 proteins in 250 species: Archae - 0; Bacteria - 0; Metazoa - 423; Fungi - 174; Plants - 145; Viruses - 0; Other Eukaryotes - 90 (source: NCBI BLink).;Nascent polypeptide-associated complex NAC transcript=eq;prot=eq; - 1 No
BD1G01600 bdi pid=Bradi1g01600.1;tid=Bradi1g01600.1;GeneName=Bradi1g01600;transcript=eq;prot=eq - Bd1 No
BD1G77957 bdi pid=Bradi1g77957.1;tid=Bradi1g77957.1;GeneName=Bradi1g77957;transcript=eq;prot=eq + Bd1 No
BD3G29087 bdi pid=Bradi3g29087.1;tid=Bradi3g29087.1;GeneName=Bradi3g29087;transcript=eq;prot=eq - Bd3 No
CP00103G00990 cpa name=evm.TU.supercontig_103.99;pid=evm.TU.supercontig_103.99;prot=eq;transcript=eq - supercontig_103 No
CP34143G00010 cpa name=evm.TU.contig_34143.1;pid=evm.TU.contig_34143.1;prot=eq;transcript=eq - contig_34143 No
CR19G01230 cre name=estExt_fgenesh2_pg.C_470105;pid=193614;prot=eq;tid=193614;transcript=eq + scaffold_19 No
FV5G15330 fve Transcription factor BTF3 homolog 4 (similar to) transcript=eq;prot=eq;pid=gene08977 + LG5 No
GM01G18780 gma 01 pid=16244111;transcript=eq;prot=eq;name=Glyma01g18780.1 - Gm01 No
GM11G12170 gma 11 pid=16283602;transcript=eq;prot=eq;name=Glyma11g12170.1 + Gm11 No
GM11G12180 gma 11 pid=16283603;transcript=eq;prot=eq;name=Glyma11g12180.1 + Gm11 No
GM12G04380 gma 12 pid=16286366;transcript=eq;prot=eq;name=Glyma12g04380.1 + Gm12 No
LJ0G039300 lja prot=eq;transcript=eq;scaffold=LjSGA_016382;name=LjSGA_016382.1 + LjSGA_016382 No
LJ3G033840 lja prot=eq;transcript=eq;scaffold=CM0216;name=chr3.CM0216.550.nc + chr3 No
MD00G472080 mdo transcript=eq;prot=eq;pid=MDP0000132483;tid=MDP0000132483;contig=MDC021921.185 - MDC021921.185 No
MD00G514180 mdo transcript=eq;prot=eq;pid=MDP0000318554;tid=MDP0000318554;contig=MDC037992.8 + MDC037992.8 No
MD06G020590 mdo transcript=eq;prot=eq;pid=MDP0000362681;tid=MDP0000362681;contig=MDC007634.164 - 6 No
<< previous
1 | 2 | 3 | 4 next >>

Download genes

Include following columns
gene_id
species
description
comment
strand
chr
outlier