Gene family  

Sub-families
ORTHO004615 (27 genes in 20 species)
ORTHO005011 (26 genes in 18 species)
View all sub-families (2)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (2 genes)
ath
Arabidopsis thaliana (3 genes)
bdi
Brachypodium distachyon (3 genes)
cpa
Carica papaya (3 genes)
fve
Fragaria vesca (2 genes)
gma
Glycine max (6 genes)
lja
Lotus japonicus (4 genes)
mdo
Malus domestica (4 genes)
mes
Manihot esculenta (3 genes)
mrcc299
Micromonas sp. RCC299 (1 gene)
mtr
Medicago truncatula (1 gene)
olu
Ostreococcus lucimarinus (1 gene)
osa
Oryza sativa ssp. japonica (2 genes)
osaindica
Oryza sativa ssp. indica (2 genes)
ota
Ostreococcus tauri (1 gene)
ppa
Physcomitrella patens (2 genes)
ptr
Populus trichocarpa (4 genes)
rco
Ricinus communis (2 genes)
sbi
Sorghum bicolor (3 genes)
tca
Theobroma cacao (2 genes)
vca
Volvox carteri (1 gene)
vvi
Vitis vinifera (3 genes)
zma
Zea mays (6 genes)



The gene family HOM002038 has 61 genes in 23 species (3 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 4, showing 20 records out of 61 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL3G21070 aly name=fgenesh2_kg.3__2167__AT3G19510.1;pid=479466;prot=eq;tid=479466 - scaffold_3 No
AL7G11710 aly name=scaffold_701235.1;pid=913493;prot=eq;tid=945006 + scaffold_7 No
AT3G19510 ath Encodes a member of the PHD-finger homeodomain protein family. The HAT3.1 homeodomain is highly divergent in sequence even at positions that are almost invariable among homeodomains. HAT3.1 shows a preference for the sequence T(A/G)(A/C)ACCA, different from those bound by other homeodomains.;Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain transcript=eq;prot=eq; - 3 No
AT3G19530 ath BEST Arabidopsis thaliana protein match is: Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain (TAIR:AT3G19510.1); Has 10 Blast hits to 10 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 10; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). transcript=eq;prot=eq; - 3 Yes
AT4G29940 ath Homeodomain protein (PRHA). Expression of the gene differs in various vegetative and floral plant tissues and is positively influenced by the phytohormone auxin. It is often associated with regions of developing vascular tissue. The prha promoter is highly responsive to the synthetic auxin, naphthalene acetic acid, in transient assays using tobacco protoplasts. The PRHA protein has the capacity to bind to TAATTG core sequence elements but requires additional adjacent bases for high-affinity binding.;pathogenesis related homeodomain protein A transcript=eq;prot=eq; - 4 No
BD2G19610 bdi ATPase activity, helicase activity (Blast2GO) pid=Bradi2g19610.2;tid=Bradi2g19610.2;GeneName=Bradi2g19610;transcript=eq;prot=eq - Bd2 No
BD2G49760 bdi ATPase activity (Blast2GO) pid=Bradi2g49760.1;tid=Bradi2g49760.1;GeneName=Bradi2g49760;transcript=eq;prot=eq - Bd2 No
BD3G03747 bdi pid=Bradi3g03747.1;tid=Bradi3g03747.1;GeneName=Bradi3g03747;transcript=eq;prot=eq + Bd3 No
CP00095G00130 cpa name=evm.TU.supercontig_95.13;pid=evm.TU.supercontig_95.13;prot=eq;transcript=eq - supercontig_95 No
CP01998G00010 cpa name=evm.TU.supercontig_1998.1;pid=evm.TU.supercontig_1998.1;prot=eq;transcript=eq + supercontig_1998 No
CP34101G00010 cpa name=evm.TU.contig_34101.1;pid=evm.TU.contig_34101.1;prot=eq;transcript=eq - contig_34101 Yes
FV2G03810 fve Homeobox protein HAT3.1 (similar to) transcript=eq;prot=eq;pid=gene22839 + LG2 No
FV4G04600 fve Pathogenesis-related homeodomain protein (PRHA) (similar to) transcript=eq;prot=eq;pid=gene17249 + LG4 No
GM09G06730 gma 09 pid=16275011;transcript=eq;prot=eq;name=Glyma09g06730.1 + Gm09 No
GM10G40640 gma 10 pid=16281652;transcript=eq;prot=eq;name=Glyma10g40640.1 + Gm10 No
GM13G00540 gma 13 pid=16289224;transcript=eq;prot=eq;name=Glyma13g00540.1 - Gm13 No
GM15G17970 gma 15 pid=16299159;transcript=eq;prot=eq;name=Glyma15g17970.1 + Gm15 No
GM17G06690 gma 17 pid=16304654;transcript=eq;prot=eq;name=Glyma17g06690.1 - Gm17 No
GM20G26700 gma 20 pid=16316946;transcript=eq;prot=eq;name=Glyma20g26700.1 - Gm20 No
LJ4G023470 lja partial;prot=eq;transcript=eq;scaffold=CM0244;name=chr4.CM0244.10.nd + chr4 No
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