Gene family  

Sub-families
ORTHO007907 (22 genes in 20 species)
ORTHO009564 (20 genes in 16 species)
ORTHO040980 (3 genes in 1 species)
View all sub-families (7)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (5 genes)
ath
Arabidopsis thaliana (2 genes)
bdi
Brachypodium distachyon (2 genes)
cpa
Carica papaya (2 genes)
cre
Chlamydomonas reinhardtii (1 gene)
fve
Fragaria vesca (3 genes)
gma
Glycine max (4 genes)
lja
Lotus japonicus (2 genes)
mdo
Malus domestica (5 genes)
mes
Manihot esculenta (3 genes)
mtr
Medicago truncatula (2 genes)
osa
Oryza sativa ssp. japonica (3 genes)
osaindica
Oryza sativa ssp. indica (3 genes)
ppa
Physcomitrella patens (1 gene)
ptr
Populus trichocarpa (4 genes)
rco
Ricinus communis (2 genes)
sbi
Sorghum bicolor (2 genes)
smo
Selaginella moellendorffii (1 gene)
tca
Theobroma cacao (2 genes)
vca
Volvox carteri (1 gene)
vvi
Vitis vinifera (7 genes)
zma
Zea mays (4 genes)



The gene family HOM002024 has 61 genes in 22 species (2 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 4, showing 20 records out of 61 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL4G19950 aly name=fgenesh2_kg.4__1493__AT2G34690.1;pid=482433;prot=eq;tid=482433 + scaffold_4 No
AL7G01840 aly name=scaffold_700190.1;pid=912448;prot=eq;tid=943961 + scaffold_7 No
AL8G01630 aly name=Al_scaffold_0008_164;pid=883900;prot=eq;tid=915413 - scaffold_8 No
AL8G01670 aly name=Al_scaffold_0008_168;pid=883904;prot=eq;tid=915417 - scaffold_8 No
AL8G01700 aly name=Al_scaffold_0008_171;pid=883907;prot=eq;tid=915420 - scaffold_8 No
AT2G34690 ath Gene product transports the glycolipid precursor sphingosine between membranes in vitro. Mutant constitutively expresses defense-related genes that accompany the hypersensitive response normally triggered by avirulent pathogens.;Glycolipid transfer protein (GLTP) family protein transcript=eq;prot=eq; + 2 No
AT4G39670 ath Glycolipid transfer protein (GLTP) family protein; FUNCTIONS IN: glycolipid transporter activity, glycolipid binding; INVOLVED IN: glycolipid transport; LOCATED IN: cytoplasm; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Glycolipid transfer protein, GLTP (InterPro:IPR014830); BEST Arabidopsis thaliana protein match is: Glycolipid transfer protein (GLTP) family protein (TAIR:AT2G34690.1); Has 290 Blast hits to 289 proteins in 84 species: Archae - 0; Bacteria - 0; Metazoa - 119; Fungi - 22; Plants - 133; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink).;Glycolipid transfer protein (GLTP) family protein transcript=eq;prot=eq; + 4 No
BD1G06510 bdi pid=Bradi1g06510.1;tid=Bradi1g06510.1;GeneName=Bradi1g06510;transcript=eq;prot=eq + Bd1 No
BD1G11280 bdi pid=Bradi1g11280.1;tid=Bradi1g11280.1;GeneName=Bradi1g11280;transcript=eq;prot=eq - Bd1 No
CP00001G01800 cpa name=evm.TU.supercontig_1.180;pid=evm.TU.supercontig_1.180;prot=eq;transcript=eq + supercontig_1 No
CP00017G00850 cpa name=evm.TU.supercontig_17.85;pid=evm.TU.supercontig_17.85;prot=eq;transcript=eq + supercontig_17 No
CR01G11720 cre name=estExt_fgenesh1_pg.C_chromosome_10763;pid=342455;prot=eq;tid=342462;transcript=eq - chromosome_1 No
FV0G01840 fve Glycolipid transfer protein domain-containing protein 1 (probable) transcript=eq;prot=eq;pid=gene03760 + scf0513158 No
FV2G26850 fve Phosphoribosylglycinamide formyltransferase 2 (probable) transcript=eq;prot=eq;pid=gene23707 + LG2 Yes
FV3G15140 fve Glycolipid transfer protein domain-containing protein 1 (probable) transcript=eq;prot=eq;pid=gene28951 - LG3 No
GM09G02560 gma 09 pid=16274553;transcript=eq;prot=eq;name=Glyma09g02560.1 + Gm09 No
GM10G42190 gma 10 pid=16281840;transcript=eq;prot=eq;name=Glyma10g42190.1 + Gm10 No
GM15G13470 gma 15 pid=16298664;transcript=eq;prot=eq;name=Glyma15g13470.1 + Gm15 No
GM20G24840 gma 20 pid=16316722;transcript=eq;prot=eq;name=Glyma20g24840.1 - Gm20 No
LJ0G015100 lja partial;prot=eq;transcript=eq;scaffold=LjSGA_009872;name=LjSGA_009872.1.1 - LjSGA_009872 No
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