Gene family 
- Id
- HOM002024
- Method
- BLASTP E_value=1e-05 MCL_I=2
- Sequences
- Sub-families
-
ORTHO007907 (22 genes in 20 species)
ORTHO009564 (20 genes in 16 species)
ORTHO040980 (3 genes in 1 species)
View all sub-families (7)
- Keywords
-
Overview of gene family content
- aly
- Arabidopsis lyrata (5 genes)
- ath
- Arabidopsis thaliana (2 genes)
- bdi
- Brachypodium distachyon (2 genes)
- cpa
- Carica papaya (2 genes)
- cre
- Chlamydomonas reinhardtii (1 gene)
- fve
- Fragaria vesca (3 genes)
- gma
- Glycine max (4 genes)
- lja
- Lotus japonicus (2 genes)
- mdo
- Malus domestica (5 genes)
- mes
- Manihot esculenta (3 genes)
- mtr
- Medicago truncatula (2 genes)
- osa
- Oryza sativa ssp. japonica (3 genes)
- osaindica
- Oryza sativa ssp. indica (3 genes)
- ppa
- Physcomitrella patens (1 gene)
- ptr
- Populus trichocarpa (4 genes)
- rco
- Ricinus communis (2 genes)
- sbi
- Sorghum bicolor (2 genes)
- smo
- Selaginella moellendorffii (1 gene)
- tca
- Theobroma cacao (2 genes)
- vca
- Volvox carteri (1 gene)
- vvi
- Vitis vinifera (7 genes)
- zma
- Zea mays (4 genes)
The gene family HOM002024 has 61 genes in 22 species (2 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:
- gene family : HOM002024
Page 1 of 4, showing 20 records out of 61 total, starting on record 1, ending on 20
| gene_id | species | description | comment | strand | chr | outlier |
|---|---|---|---|---|---|---|
| AL4G19950 | aly | name=fgenesh2_kg.4__1493__AT2G34690.1;pid=482433;prot=eq;tid=482433 | + | scaffold_4 | No | |
| AL7G01840 | aly | name=scaffold_700190.1;pid=912448;prot=eq;tid=943961 | + | scaffold_7 | No | |
| AL8G01630 | aly | name=Al_scaffold_0008_164;pid=883900;prot=eq;tid=915413 | - | scaffold_8 | No | |
| AL8G01670 | aly | name=Al_scaffold_0008_168;pid=883904;prot=eq;tid=915417 | - | scaffold_8 | No | |
| AL8G01700 | aly | name=Al_scaffold_0008_171;pid=883907;prot=eq;tid=915420 | - | scaffold_8 | No | |
| AT2G34690 | ath | Gene product transports the glycolipid precursor sphingosine between membranes in vitro. Mutant constitutively expresses defense-related genes that accompany the hypersensitive response normally triggered by avirulent pathogens.;Glycolipid transfer protein (GLTP) family protein | transcript=eq;prot=eq; | + | 2 | No |
| AT4G39670 | ath | Glycolipid transfer protein (GLTP) family protein; FUNCTIONS IN: glycolipid transporter activity, glycolipid binding; INVOLVED IN: glycolipid transport; LOCATED IN: cytoplasm; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Glycolipid transfer protein, GLTP (InterPro:IPR014830); BEST Arabidopsis thaliana protein match is: Glycolipid transfer protein (GLTP) family protein (TAIR:AT2G34690.1); Has 290 Blast hits to 289 proteins in 84 species: Archae - 0; Bacteria - 0; Metazoa - 119; Fungi - 22; Plants - 133; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink).;Glycolipid transfer protein (GLTP) family protein | transcript=eq;prot=eq; | + | 4 | No |
| BD1G06510 | bdi | pid=Bradi1g06510.1;tid=Bradi1g06510.1;GeneName=Bradi1g06510;transcript=eq;prot=eq | + | Bd1 | No | |
| BD1G11280 | bdi | pid=Bradi1g11280.1;tid=Bradi1g11280.1;GeneName=Bradi1g11280;transcript=eq;prot=eq | - | Bd1 | No | |
| CP00001G01800 | cpa | name=evm.TU.supercontig_1.180;pid=evm.TU.supercontig_1.180;prot=eq;transcript=eq | + | supercontig_1 | No | |
| CP00017G00850 | cpa | name=evm.TU.supercontig_17.85;pid=evm.TU.supercontig_17.85;prot=eq;transcript=eq | + | supercontig_17 | No | |
| CR01G11720 | cre | name=estExt_fgenesh1_pg.C_chromosome_10763;pid=342455;prot=eq;tid=342462;transcript=eq | - | chromosome_1 | No | |
| FV0G01840 | fve | Glycolipid transfer protein domain-containing protein 1 (probable) | transcript=eq;prot=eq;pid=gene03760 | + | scf0513158 | No |
| FV2G26850 | fve | Phosphoribosylglycinamide formyltransferase 2 (probable) | transcript=eq;prot=eq;pid=gene23707 | + | LG2 | Yes |
| FV3G15140 | fve | Glycolipid transfer protein domain-containing protein 1 (probable) | transcript=eq;prot=eq;pid=gene28951 | - | LG3 | No |
| GM09G02560 | gma | 09 | pid=16274553;transcript=eq;prot=eq;name=Glyma09g02560.1 | + | Gm09 | No |
| GM10G42190 | gma | 10 | pid=16281840;transcript=eq;prot=eq;name=Glyma10g42190.1 | + | Gm10 | No |
| GM15G13470 | gma | 15 | pid=16298664;transcript=eq;prot=eq;name=Glyma15g13470.1 | + | Gm15 | No |
| GM20G24840 | gma | 20 | pid=16316722;transcript=eq;prot=eq;name=Glyma20g24840.1 | - | Gm20 | No |
| LJ0G015100 | lja | partial;prot=eq;transcript=eq;scaffold=LjSGA_009872;name=LjSGA_009872.1.1 | - | LjSGA_009872 | No |